Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QFX59_RS03310 Genome accession   NZ_CP132036
Coordinates   657416..657811 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 1.9b     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 652416..662811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX59_RS03280 - 653674..654078 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  QFX59_RS03285 - 654416..654508 (+) 93 WP_001790611.1 hypothetical protein -
  QFX59_RS03290 - 654640..654873 (+) 234 WP_000384523.1 DUF1146 family protein -
  QFX59_RS03295 murA 654984..656249 (+) 1266 WP_049308991.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QFX59_RS03300 fabZ 656283..656723 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QFX59_RS03305 - 656782..657222 (-) 441 WP_000846746.1 YwpF-like family protein -
  QFX59_RS03310 ssb 657416..657811 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  QFX59_RS03315 sceD 658200..658895 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  QFX59_RS03320 tenA 659281..659970 (+) 690 WP_000396077.1 thiaminase II -
  QFX59_RS03325 thiD 659963..660793 (+) 831 WP_304984645.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QFX59_RS03330 thiM 660777..661568 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  QFX59_RS03335 thiE 661570..662211 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=866869 QFX59_RS03310 WP_000932694.1 657416..657811(+) (ssb) [Staphylococcus aureus strain 1.9b]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=866869 QFX59_RS03310 WP_000932694.1 657416..657811(+) (ssb) [Staphylococcus aureus strain 1.9b]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992