Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QFX47_RS10290 Genome accession   NZ_CP132033
Coordinates   2084655..2085050 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2079655..2090050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX47_RS10265 thiE 2080254..2080895 (-) 642 WP_000483156.1 thiamine phosphate synthase -
  QFX47_RS10270 thiM 2080897..2081688 (-) 792 WP_001108482.1 hydroxyethylthiazole kinase -
  QFX47_RS10275 thiD 2081672..2082502 (-) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QFX47_RS10280 tenA 2082495..2083185 (-) 691 Protein_1985 thiaminase II -
  QFX47_RS10285 sceD 2083571..2084266 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  QFX47_RS10290 ssb 2084655..2085050 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  QFX47_RS10295 - 2085244..2085684 (+) 441 WP_000846746.1 YwpF-like family protein -
  QFX47_RS10300 fabZ 2085742..2086182 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QFX47_RS10305 murA 2086216..2087481 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QFX47_RS10310 - 2087592..2087825 (-) 234 WP_000384523.1 DUF1146 family protein -
  QFX47_RS10315 - 2087957..2088049 (-) 93 WP_001790611.1 hypothetical protein -
  QFX47_RS10320 - 2088444..2088848 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=866860 QFX47_RS10290 WP_000932694.1 2084655..2085050(-) (ssb) [Staphylococcus aureus strain 2.1]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=866860 QFX47_RS10290 WP_000932694.1 2084655..2085050(-) (ssb) [Staphylococcus aureus strain 2.1]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992