Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QFX53_RS10985 Genome accession   NZ_CP132031
Coordinates   2186878..2187447 (-) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.3a     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2181878..2192447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX53_RS10945 - 2182352..2182960 (-) 609 WP_000020302.1 class I SAM-dependent methyltransferase -
  QFX53_RS10950 rplL 2183135..2183503 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  QFX53_RS10955 rplJ 2183546..2184046 (-) 501 WP_001273087.1 50S ribosomal protein L10 -
  QFX53_RS10960 rplA 2184318..2185010 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  QFX53_RS10965 rplK 2185218..2185640 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  QFX53_RS10970 nusG 2185821..2186369 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  QFX53_RS10975 secE 2186382..2186564 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  QFX53_RS10980 rpmG 2186620..2186763 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  QFX53_RS10985 sigH 2186878..2187447 (-) 570 WP_000872876.1 sigma-70 family RNA polymerase sigma factor Regulator
  QFX53_RS10990 - 2187528..2188052 (-) 525 WP_000664738.1 NYN domain-containing protein -
  QFX53_RS10995 rlmB 2188052..2188798 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QFX53_RS11000 - 2188806..2189210 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  QFX53_RS11005 cysS 2189203..2190603 (-) 1401 WP_000631973.1 cysteine--tRNA ligase -
  QFX53_RS11010 cysE 2190587..2191234 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=866818 QFX53_RS10985 WP_000872876.1 2186878..2187447(-) (sigH) [Staphylococcus aureus strain 2.3a]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=866818 QFX53_RS10985 WP_000872876.1 2186878..2187447(-) (sigH) [Staphylococcus aureus strain 2.3a]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984