Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QFX53_RS05940 Genome accession   NZ_CP132031
Coordinates   1136339..1137025 (+) Length   228 a.a.
NCBI ID   WP_001793467.1    Uniprot ID   A0A641AAY3
Organism   Staphylococcus aureus strain 2.3a     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1131339..1142025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX53_RS05905 yqeH 1131866..1132966 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  QFX53_RS05910 aroE 1132980..1133786 (+) 807 WP_000666748.1 shikimate dehydrogenase -
  QFX53_RS05915 yhbY 1133790..1134080 (+) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  QFX53_RS05920 nadD 1134083..1134652 (+) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  QFX53_RS05925 yqeK 1134642..1135226 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QFX53_RS05930 rsfS 1135227..1135580 (+) 354 WP_001088022.1 ribosome silencing factor -
  QFX53_RS05935 - 1135583..1136299 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  QFX53_RS05940 comEA 1136339..1137025 (+) 687 WP_001793467.1 ComEA family DNA-binding protein Machinery gene
  QFX53_RS05945 - 1137117..1137578 (+) 462 WP_000439693.1 ComE operon protein 2 -
  QFX53_RS05950 comEC 1137583..1139784 (+) 2202 WP_001566670.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QFX53_RS05955 holA 1139841..1140815 (+) 975 WP_001282568.1 DNA polymerase III subunit delta -
  QFX53_RS05960 rpsT 1140860..1141111 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25786.50 Da        Isoelectric Point: 9.6753

>NTDB_id=866798 QFX53_RS05940 WP_001793467.1 1136339..1137025(+) (comEA) [Staphylococcus aureus strain 2.3a]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDNALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=866798 QFX53_RS05940 WP_001793467.1 1136339..1137025(+) (comEA) [Staphylococcus aureus strain 2.3a]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATAATG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641AAY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

100

100

1
  comEA Staphylococcus aureus N315

97.368

100

0.974