Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QFX53_RS03190 Genome accession   NZ_CP132031
Coordinates   638485..638880 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.3a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 633485..643880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX53_RS03160 - 634687..635091 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  QFX53_RS03165 - 635486..635578 (+) 93 WP_001790611.1 hypothetical protein -
  QFX53_RS03170 - 635710..635943 (+) 234 WP_000384523.1 DUF1146 family protein -
  QFX53_RS03175 murA 636054..637319 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QFX53_RS03180 fabZ 637353..637793 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QFX53_RS03185 - 637851..638291 (-) 441 WP_000846746.1 YwpF-like family protein -
  QFX53_RS03190 ssb 638485..638880 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  QFX53_RS03195 sceD 639269..639964 (+) 696 WP_000752001.1 lytic transglycosylase SceD -
  QFX53_RS03200 tenA 640350..641040 (+) 691 Protein_630 thiaminase II -
  QFX53_RS03205 thiD 641033..641863 (+) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QFX53_RS03210 thiM 641847..642638 (+) 792 WP_001108482.1 hydroxyethylthiazole kinase -
  QFX53_RS03215 thiE 642640..643281 (+) 642 WP_000483156.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=866787 QFX53_RS03190 WP_000932694.1 638485..638880(+) (ssb) [Staphylococcus aureus strain 2.3a]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=866787 QFX53_RS03190 WP_000932694.1 638485..638880(+) (ssb) [Staphylococcus aureus strain 2.3a]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992