Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QFX61_RS11340 Genome accession   NZ_CP132029
Coordinates   2229199..2229768 (-) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.4b     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2224199..2234768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX61_RS11300 - 2224673..2225281 (-) 609 WP_000020302.1 class I SAM-dependent methyltransferase -
  QFX61_RS11305 rplL 2225456..2225824 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  QFX61_RS11310 rplJ 2225867..2226367 (-) 501 WP_001273087.1 50S ribosomal protein L10 -
  QFX61_RS11315 rplA 2226639..2227331 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  QFX61_RS11320 rplK 2227539..2227961 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  QFX61_RS11325 nusG 2228142..2228690 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  QFX61_RS11330 secE 2228703..2228885 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  QFX61_RS11335 rpmG 2228941..2229084 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  QFX61_RS11340 sigH 2229199..2229768 (-) 570 WP_000872876.1 sigma-70 family RNA polymerase sigma factor Regulator
  QFX61_RS11345 - 2229849..2230373 (-) 525 WP_000664738.1 NYN domain-containing protein -
  QFX61_RS11350 rlmB 2230373..2231119 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QFX61_RS11355 - 2231127..2231531 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  QFX61_RS11360 cysS 2231524..2232924 (-) 1401 WP_000631973.1 cysteine--tRNA ligase -
  QFX61_RS11365 cysE 2232908..2233555 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=866777 QFX61_RS11340 WP_000872876.1 2229199..2229768(-) (sigH) [Staphylococcus aureus strain 2.4b]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=866777 QFX61_RS11340 WP_000872876.1 2229199..2229768(-) (sigH) [Staphylococcus aureus strain 2.4b]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984