Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   QFX61_RS06175 Genome accession   NZ_CP132029
Coordinates   1183763..1184260 (+) Length   165 a.a.
NCBI ID   WP_029642894.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.4b     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1178763..1189260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX61_RS06135 - 1178807..1179793 (+) 987 WP_000161314.1 ROK family glucokinase -
  QFX61_RS06140 - 1179793..1180122 (+) 330 WP_304984508.1 MTH1187 family thiamine-binding protein -
  QFX61_RS06145 - 1180119..1180742 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QFX61_RS06150 comGA 1180794..1181768 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  QFX61_RS06155 comGB 1181740..1182810 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  QFX61_RS06160 comGC 1182824..1183135 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QFX61_RS06165 comGD 1183113..1183559 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  QFX61_RS06170 comGE 1183546..1183845 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  QFX61_RS06175 comGF 1183763..1184260 (+) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  QFX61_RS06180 - 1184357..1184503 (+) 147 WP_001789879.1 hypothetical protein -
  QFX61_RS06185 - 1184493..1185017 (+) 525 WP_001015119.1 shikimate kinase -
  QFX61_RS06190 gcvT 1185176..1186267 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  QFX61_RS06195 gcvPA 1186287..1187633 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QFX61_RS06200 gcvPB 1187626..1189098 (+) 1473 WP_000202189.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19196.92 Da        Isoelectric Point: 10.2192

>NTDB_id=866765 QFX61_RS06175 WP_029642894.1 1183763..1184260(+) (comGF) [Staphylococcus aureus strain 2.4b]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTNVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=866765 QFX61_RS06175 WP_029642894.1 1183763..1184260(+) (comGF) [Staphylococcus aureus strain 2.4b]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAAATGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(70-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

97.576

100

0.976
  comGF Staphylococcus aureus MW2

97.576

100

0.976