Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   WHQ45_RS08120 Genome accession   NZ_CP148163
Coordinates   1581555..1583453 (+) Length   632 a.a.
NCBI ID   WP_002851237.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323HCJ0036     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1576555..1588453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ45_RS08090 (WHQ45_08090) - 1577219..1577491 (+) 273 WP_002858971.1 NifU family protein -
  WHQ45_RS08095 (WHQ45_08095) - 1577478..1578029 (+) 552 WP_002851410.1 hypothetical protein -
  WHQ45_RS08100 (WHQ45_08100) murE 1578013..1579296 (+) 1284 WP_002865460.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  WHQ45_RS08105 (WHQ45_08105) - 1579300..1579611 (+) 312 WP_002851172.1 YbaB/EbfC family nucleoid-associated protein -
  WHQ45_RS08110 (WHQ45_08110) - 1579608..1580702 (+) 1095 WP_002851505.1 PDZ domain-containing protein -
  WHQ45_RS08115 (WHQ45_08115) ispA 1580699..1581544 (+) 846 WP_002851379.1 polyprenyl synthetase family protein -
  WHQ45_RS08120 (WHQ45_08120) recP/tkt 1581555..1583453 (+) 1899 WP_002851237.1 transketolase Machinery gene
  WHQ45_RS08125 (WHQ45_08125) iamB 1583455..1584564 (+) 1110 WP_002851140.1 MlaE family lipid ABC transporter permease subunit -
  WHQ45_RS08130 (WHQ45_08130) iamA 1584565..1585287 (+) 723 WP_002851414.1 ABC transporter ATP-binding protein -
  WHQ45_RS08135 (WHQ45_08135) - 1585290..1586180 (+) 891 WP_002851168.1 MlaD family protein -
  WHQ45_RS08140 (WHQ45_08140) - 1586180..1586779 (+) 600 WP_002851511.1 ABC-type transport auxiliary lipoprotein family protein -
  WHQ45_RS08145 (WHQ45_08145) - 1586835..1587335 (+) 501 WP_002851413.1 flagellar FLiS export co-chaperone -

Sequence

Protein


Download         Length: 632 a.a.        Molecular weight: 69666.50 Da        Isoelectric Point: 6.4693

>NTDB_id=866746 WHQ45_RS08120 WP_002851237.1 1581555..1583453(+) (recP/tkt) [Campylobacter jejuni strain Z1323HCJ0036]
MNIQILQEQANTLRFLSADMVQKANSGHPGTPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSG
YDLSLEDLKNFRQLHSKTPGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
YEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYEEINKALEQAKKSTKPCLIIAKT
TIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERL
LNPDFNKIAYPDFKGKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREHAMAAINNA
FARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENV
KAWQIALNADIPSAFVLSRQKLKALNEPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMP
CFELFEKQDKAYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFERFGFSVSKLVNFILSK

Nucleotide


Download         Length: 1899 bp        

>NTDB_id=866746 WHQ45_RS08120 WP_002851237.1 1581555..1583453(+) (recP/tkt) [Campylobacter jejuni strain Z1323HCJ0036]
ATGAACATTCAAATTTTACAAGAACAGGCAAATACTCTAAGATTTTTAAGTGCTGATATGGTGCAAAAAGCAAACTCAGG
ACACCCAGGTACACCTTTGGGCTTAGCAGATATTTTAAGTGTTTTAAGTTATCATTTAAAACACAATCCCAAAAATCCAA
CTTGGCTAAACCGAGATAGACTTGTATTTTCAGGCGGACATGCAAGTGCTTTGCTTTATAGTTTTTTACATTTAAGCGGC
TATGACTTAAGCTTAGAAGATCTTAAAAATTTCCGCCAACTTCATTCTAAAACCCCTGGACACCCTGAAATTTCAACTCT
TGGAGTAGAAATCGCTACAGGCCCTTTAGGACAAGGCGTTGCCAATGCTGTAGGCTTTGCTATGGCAGCAAAAAAAGCAC
AAAATTTGCTAGGCAGTGATTTAATCGATCATAAAATTTATTGTCTTTGCGGAGATGGGGATTTACAAGAAGGCATTTCT
TATGAAGCTTGTTCTTTAGCAGGACTTCACAAACTTGATAACTTCATACTTATTTATGATAGCAACAATATCTCTATAGA
AGGCGATGTAGGTTTAGCCTTTAACGAAAATGTAAAAATGCGTTTTGAAGCACAAGGATTTGAAGTTTTAAGTATAAATG
GACACGATTATGAAGAAATCAATAAAGCCTTAGAACAAGCTAAAAAATCCACAAAACCTTGTCTTATCATCGCAAAAACA
ACTATAGCAAAGGGTGCAGGAGAGCTTGAAGGCAGTCATAAAAGCCATGGCGCACCTTTGGGTGAAGAAGTGATTAAAAA
AGCCAAAGAACAAGCAGGCTTTGATCCAAATATCAGTTTTCATATCCCACAAGCAAGCAAAATCCGCTTTGAAAGTGCTG
TAGAACTTGGGGATTTAGAAGAAGCAAAATGGAAAGATAAGCTTGAAAAAAGTGCTAAAAAAGAACTTTTAGAAAGGCTA
TTAAATCCTGATTTTAACAAGATAGCTTATCCTGATTTTAAAGGAAAAGATCTTGCTACAAGAGATAGTAATGGTGAAAT
TTTAAATGTTTTAGCTAAAAATTTAGAAGGATTTTTAGGTGGAAGTGCAGACTTAGGCCCTTCGAATAAAACAGAACTTC
ATAGTATGGGAGACTTTGTAGAAGGTAAAAATATCCATTTTGGTATCAGAGAACACGCTATGGCAGCGATTAACAATGCT
TTTGCAAGATATGGAATTTTCTTACCATTTTCGGCAACTTTTTTCATCTTTAGCGAGTACTTAAAACCTGCCGCAAGAAT
AGCAGCTCTAATGAAAATCAAACATTTTTTCATTTTCACACACGATAGCATAGGCGTGGGCGAAGATGGACCAACACACC
AACCTATAGAACAACTTAGCACTTTTAGAGCTATGCCAAATTTTTTAACCTTTAGACCTGCTGATGGGGTGGAAAATGTC
AAAGCTTGGCAAATAGCCCTAAATGCTGATATTCCGAGTGCTTTTGTGCTTTCACGCCAAAAACTCAAAGCTCTAAATGA
ACCTGTTTTTGGAGATGTAAAAAACGGAGCGTATTTACTCAAAGAAAGCAAAGAGGCTAAATTTACACTTCTAGCAAGTG
GAAGTGAAGTTTGGCTTTGTCTAGAAAGTGCAAACGAACTTGAAAAACAAGGTTTTGCTTGTAATGTTGTTTCCATGCCT
TGTTTTGAACTTTTTGAAAAACAAGATAAAGCTTATCAAGAAAGATTGTTAAAAGGTGAAGTTATAGGTGTTGAAGCAGC
ACATTCTAATGAACTTTATAAATTTTGCCATAAAGTATATGGCATAGAAAGTTTTGGAGAAAGTGGTAAAGACAAAGATG
TATTTGAACGCTTTGGATTTAGCGTTTCAAAGCTTGTAAATTTTATCCTTAGCAAATAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-315)

Transketolase, C-terminal domain (Transketolase_C)

(521-594)

Transketolase, pyrimidine binding domain (Transket_pyr)

(338-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

40.741

100

0.418