Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QFX55_RS10975 Genome accession   NZ_CP132024
Coordinates   2186752..2187321 (-) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.4a     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2181752..2192321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX55_RS10935 - 2182227..2182835 (-) 609 WP_000020302.1 class I SAM-dependent methyltransferase -
  QFX55_RS10940 rplL 2183010..2183378 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  QFX55_RS10945 rplJ 2183421..2183921 (-) 501 WP_001273087.1 50S ribosomal protein L10 -
  QFX55_RS10950 rplA 2184193..2184885 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  QFX55_RS10955 rplK 2185093..2185515 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  QFX55_RS10960 nusG 2185696..2186244 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  QFX55_RS10965 secE 2186265..2186438 (-) 174 Protein_2132 preprotein translocase subunit SecE -
  QFX55_RS10970 rpmG 2186494..2186637 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  QFX55_RS10975 sigH 2186752..2187321 (-) 570 WP_000872876.1 sigma-70 family RNA polymerase sigma factor Regulator
  QFX55_RS10980 - 2187402..2187926 (-) 525 WP_000664738.1 NYN domain-containing protein -
  QFX55_RS10985 rlmB 2187926..2188672 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QFX55_RS10990 - 2188680..2189084 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  QFX55_RS10995 cysS 2189077..2190477 (-) 1401 WP_000631973.1 cysteine--tRNA ligase -
  QFX55_RS11000 cysE 2190461..2191108 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=866736 QFX55_RS10975 WP_000872876.1 2186752..2187321(-) (sigH) [Staphylococcus aureus strain 2.4a]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=866736 QFX55_RS10975 WP_000872876.1 2186752..2187321(-) (sigH) [Staphylococcus aureus strain 2.4a]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984