Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QFX55_RS03180 Genome accession   NZ_CP132024
Coordinates   638371..638766 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.4a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 633371..643766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX55_RS03150 - 634573..634977 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  QFX55_RS03155 - 635372..635464 (+) 93 WP_001790611.1 hypothetical protein -
  QFX55_RS03160 - 635596..635829 (+) 234 WP_000384523.1 DUF1146 family protein -
  QFX55_RS03165 murA 635940..637205 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QFX55_RS03170 fabZ 637239..637679 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QFX55_RS03175 - 637737..638177 (-) 441 WP_000846746.1 YwpF-like family protein -
  QFX55_RS03180 ssb 638371..638766 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  QFX55_RS03185 sceD 639155..639850 (+) 696 WP_000752001.1 lytic transglycosylase SceD -
  QFX55_RS03190 tenA 640236..640926 (+) 691 Protein_628 thiaminase II -
  QFX55_RS03195 thiD 640919..641749 (+) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QFX55_RS03200 thiM 641733..642524 (+) 792 WP_001108482.1 hydroxyethylthiazole kinase -
  QFX55_RS03205 thiE 642526..643167 (+) 642 WP_000483156.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=866705 QFX55_RS03180 WP_000932694.1 638371..638766(+) (ssb) [Staphylococcus aureus strain 2.4a]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=866705 QFX55_RS03180 WP_000932694.1 638371..638766(+) (ssb) [Staphylococcus aureus strain 2.4a]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992