Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   WHP33_RS03070 Genome accession   NZ_CP148160
Coordinates   585604..586377 (+) Length   257 a.a.
NCBI ID   WP_002898548.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323HCJ0047     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 580604..591377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP33_RS03055 (WHP33_03055) - 581453..583387 (-) 1935 WP_012006667.1 ribonuclease R family protein -
  WHP33_RS03060 (WHP33_03060) ilvC 583506..584528 (+) 1023 WP_038813911.1 ketol-acid reductoisomerase -
  WHP33_RS03065 (WHP33_03065) - 584532..585614 (+) 1083 WP_052789501.1 divergent polysaccharide deacetylase family protein -
  WHP33_RS03070 (WHP33_03070) dprA 585604..586377 (+) 774 WP_002898548.1 DNA-processing protein DprA Machinery gene
  WHP33_RS03075 (WHP33_03075) dprB 586374..586757 (+) 384 WP_002898550.1 Holliday junction resolvase RuvX Machinery gene
  WHP33_RS03080 (WHP33_03080) - 586786..587625 (+) 840 WP_079264574.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WHP33_RS03085 (WHP33_03085) msrA 587801..588298 (-) 498 WP_002898554.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WHP33_RS03090 (WHP33_03090) ppa 588339..588857 (-) 519 WP_002852138.1 inorganic diphosphatase -
  WHP33_RS03095 (WHP33_03095) adk 588867..589445 (-) 579 WP_002872374.1 adenylate kinase -
  WHP33_RS03100 (WHP33_03100) aspS 589442..591193 (-) 1752 WP_002898557.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28825.73 Da        Isoelectric Point: 7.6817

>NTDB_id=866574 WHP33_RS03070 WP_002898548.1 585604..586377(+) (dprA) [Campylobacter jejuni strain Z1323HCJ0047]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSIYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELHKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDMNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLV

Nucleotide


Download         Length: 774 bp        

>NTDB_id=866574 WHP33_RS03070 WP_002898548.1 585604..586377(+) (dprA) [Campylobacter jejuni strain Z1323HCJ0047]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTATTTATACGAAAAATTGTG
TTTTTTCTTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAGCAAATTTATGAAAATGCTTTAGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCTGTTGTGGTTGCGCAAGCAGATATAAAAAGTGGTTCCATGCAAAGT
GCAAAACTTGCTTTAGAACTTCATAAGCCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGGGACTAATTTACT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGCGAGTTTGCAAGTATAGATATGAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.828

99.611

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459