Detailed information NTG0866373

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Q4S45_RS01780
• Genome accession: NZ_CP131935
• Coordinates: 377838..378707 (-)
• Length: 289 a.a.
• NCBI ID: WP_305512021.1
• Uniprot ID: A0AAT9WLH2
• Organism: Massilia sp. R2A-15
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 372838..383707

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q4S45_RS01745 (Q4S45_01745)	-	372919..373797 (+)	879	WP_305508569.1	ATP-binding protein	-
Q4S45_RS01750 (Q4S45_01750)	-	373794..374258 (+)	465	WP_305508570.1	NUDIX domain-containing protein	-
Q4S45_RS01755 (Q4S45_01755)	-	374289..375584 (+)	1296	WP_305508572.1	D-amino acid dehydrogenase	-
Q4S45_RS01760 (Q4S45_01760)	yidD	375661..376146 (-)	486	WP_305508574.1	membrane protein insertion efficiency factor YidD	-
Q4S45_RS01765 (Q4S45_01765)	-	376147..376329 (-)	183	WP_305508576.1	DNA gyrase inhibitor YacG	-
Q4S45_RS01770 (Q4S45_01770)	zapD	376345..377100 (-)	756	WP_305508577.1	cell division protein ZapD	-
Q4S45_RS01775 (Q4S45_01775)	coaE	377165..377812 (-)	648	WP_305508579.1	dephospho-CoA kinase	-
Q4S45_RS01780 (Q4S45_01780)	pilD	377838..378707 (-)	870	WP_305512021.1	A24 family peptidase	Machinery gene
Q4S45_RS01785 (Q4S45_01785)	-	378914..379741 (+)	828	WP_305508581.1	universal stress protein	-
Q4S45_RS01790 (Q4S45_01790)	-	379751..380206 (+)	456	WP_305508583.1	universal stress protein	-
Q4S45_RS01795 (Q4S45_01795)	copC	380275..380628 (+)	354	WP_305508585.1	copper homeostasis periplasmic binding protein CopC	-
Q4S45_RS01800 (Q4S45_01800)	-	380629..381513 (+)	885	WP_305508587.1	copper resistance D family protein	-
Q4S45_RS01805 (Q4S45_01805)	-	381567..382070 (-)	504	WP_305508589.1	hypothetical protein	-
Q4S45_RS01810 (Q4S45_01810)	-	382147..382842 (-)	696	WP_305508591.1	RES family NAD+ phosphorylase	-
Q4S45_RS01815 (Q4S45_01815)	-	382835..383266 (-)	432	WP_305508593.1	hypothetical protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 30848.59 Da
• Isoelectric Point: 7.0164

>NTDB_id=866373 Q4S45_RS01780 WP_305512021.1 377838..378707(-) (pilD) [Massilia sp. R2A-15]
MLLETLLFAAPGSLGATLAAGLFGLLIGSFLNVVIYRLPKMMQRDSDNYVAHESGKELPHQDNFNLMVPRSACPHCGHQI
TALENIPVVSYIALGGKCSACKAPISIRYPAIELVTGLLSALLIWKFGSGWAGLATLGFGWALLAMTAIDYDTQLLPDDL
TFPLLWAGLLININGTFVPLQDAVIGAAAGYLVLWAVYWLFKLATGKEGMGYGDFKLLAALGAWLGWAMLPAIILLSSVV
GALVGICLILFAKHGREKPIPFGPYLAAAGMIALLYGPQITAFSHQFIG

Nucleotide

• Length: 870 bp

>NTDB_id=866373 Q4S45_RS01780 WP_305512021.1 377838..378707(-) (pilD) [Massilia sp. R2A-15]
ATTCTTTTGGAAACCCTATTGTTTGCCGCCCCCGGCTCGCTGGGCGCGACCCTGGCCGCAGGACTGTTCGGCTTGTTGAT
CGGCAGTTTCCTCAACGTCGTCATCTACCGCCTGCCGAAGATGATGCAGCGCGACTCCGACAATTACGTGGCGCATGAGA
GCGGCAAGGAATTGCCGCACCAGGACAATTTCAACCTGATGGTGCCGCGCTCGGCCTGTCCGCATTGCGGCCACCAGATC
ACCGCGCTCGAAAACATTCCCGTGGTCAGCTACATCGCGCTGGGCGGCAAGTGCAGCGCGTGCAAGGCGCCGATTTCGAT
CCGCTATCCGGCCATCGAGCTGGTCACCGGCCTGCTGTCGGCGCTGCTGATCTGGAAATTCGGCAGCGGCTGGGCCGGCC
TTGCCACGCTCGGCTTCGGCTGGGCGCTGCTGGCGATGACGGCGATCGACTACGACACCCAGCTGCTGCCGGACGACCTG
ACCTTCCCGCTGCTGTGGGCCGGTCTGCTCATCAATATCAACGGCACCTTCGTCCCGCTGCAGGATGCGGTGATCGGCGC
GGCGGCCGGCTACCTGGTGCTGTGGGCTGTCTATTGGCTGTTCAAGCTGGCGACCGGCAAGGAAGGCATGGGCTATGGCG
ACTTCAAGCTGCTGGCCGCACTCGGCGCCTGGCTGGGCTGGGCCATGCTGCCGGCCATCATCCTTCTGTCGTCGGTGGTC
GGCGCGCTGGTCGGTATCTGCCTGATCCTGTTCGCCAAACACGGCCGCGAAAAGCCGATCCCGTTCGGCCCCTACCTGGC
CGCGGCCGGCATGATCGCGCTGCTGTACGGCCCGCAGATCACCGCTTTCTCGCACCAGTTCATCGGCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.061	91.349	0.512
pilD	Vibrio campbellii strain DS40M4	55.303	91.349	0.505
pilD	Acinetobacter baumannii D1279779	50.943	91.696	0.467
pilD	Acinetobacter nosocomialis M2	50.189	91.696	0.46
pilD	Neisseria gonorrhoeae MS11	49.02	88.235	0.433