Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   Q7W79_RS17380 Genome accession   NZ_CP131931
Coordinates   2075366..2076769 (-) Length   467 a.a.
NCBI ID   WP_005461534.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain RP0132     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2070366..2081769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W79_RS17345 (Q7W79_17790) moaE 2070938..2071393 (-) 456 WP_025622755.1 molybdopterin synthase catalytic subunit MoaE -
  Q7W79_RS17350 (Q7W79_17795) moaD 2071395..2071652 (-) 258 WP_005461535.1 molybdopterin synthase sulfur carrier subunit -
  Q7W79_RS17355 (Q7W79_17800) moaC 2071649..2072128 (-) 480 WP_273978801.1 cyclic pyranopterin monophosphate synthase MoaC -
  Q7W79_RS17360 (Q7W79_17805) moaB 2072155..2072667 (-) 513 WP_005461494.1 molybdenum cofactor biosynthesis protein B -
  Q7W79_RS17365 (Q7W79_17810) moaA 2072770..2073759 (-) 990 WP_005461510.1 GTP 3',8-cyclase MoaA -
  Q7W79_RS17370 (Q7W79_17815) - 2074055..2074948 (+) 894 WP_005494500.1 YvcK family protein -
  Q7W79_RS17375 (Q7W79_17820) luxU 2075025..2075363 (-) 339 WP_025500803.1 quorum-sensing phosphorelay protein LuxU -
  Q7W79_RS17380 (Q7W79_17825) luxO 2075366..2076769 (-) 1404 WP_005461534.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  Q7W79_RS17385 (Q7W79_17830) uvrB 2077059..2079089 (-) 2031 WP_273978802.1 excinuclease ABC subunit UvrB -
  Q7W79_RS17395 (Q7W79_17840) rsxA 2080079..2080657 (+) 579 WP_005380762.1 electron transport complex subunit RsxA -
  Q7W79_RS17400 (Q7W79_17845) rsxB 2080661..2081257 (+) 597 WP_021822763.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52173.71 Da        Isoelectric Point: 6.2547

>NTDB_id=866356 Q7W79_RS17380 WP_005461534.1 2075366..2076769(-) (luxO) [Vibrio parahaemolyticus strain RP0132]
MQQKTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
VSKLIEPKAMTVSEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=866356 Q7W79_RS17380 WP_005461534.1 2075366..2076769(-) (luxO) [Vibrio parahaemolyticus strain RP0132]
ATGCAACAAAAAACTGAAGGCCAAAAATCTCGTTACCTTCTGATGGTTGAGGATACAGCATCGGTTGCGGCGTTATACCG
CTCGTACCTCACGCCGTTAGGGATCGACATTAATATTGTCGGTACAGGTAGAGATGCCATTGAAAGTCTCAATCATCGAA
TTCCAGATCTTATTCTTCTCGATCTTCGTTTGCCTGATATGACGGGGATGGATGTTTTGCACGCCGTTAAAAAGAGTCAT
CCAGATGTGCCGATCATTTTCATGACGGCTCATGGCTCTATCGATACAGCGGTAGAAGCGATGCGTCATGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTCTGCGTGTTACGGTCAACAACGCAATTCGCAAAGCAACTAAGCTAAAAA
ATGAAGCAGATAATCCGGGTAATCAGAATTACCAAGGTTTTATCGGCAGCAGCCAAACCATGCAGCAGGTCTATCGCACC
ATTGACTCTGCCGCTAGCAGTAAAGCGAGTATCTTTATTACTGGTGAAAGTGGTACGGGTAAAGAGGTATGCGCAGAAGC
CATCCACGCTGCAAGCAAACGTGGTGATAAGCCGTTTATTGCCATCAACTGTGCAGCCATACCTAAAGACTTAATTGAAA
GTGAACTATTTGGTCACGTAAAAGGGGCATTTACTGGTGCGGCAAATGACCGTCAAGGTGCCGCTGAGTTAGCCGATGGT
GGCACGTTGTTCCTCGATGAATTGTGTGAAATGGATTTGGACTTACAAACCAAATTATTGCGATTCATCCAAACCGGTAC
TTTCCAAAAAGTAGGCTCTTCAAAAATGAAGAGTGTGGACGTGCGCTTCGTTTGTGCGACCAACCGAGACCCTTGGAAAG
AAGTTCAAGAAGGACGTTTCCGCGAAGACTTATACTACCGGTTATACGTGATTCCTTTGCATCTTCCGCCTCTTCGCGAA
CGTGGTGAAGATGTGATTGAAATTGCGTACTCACTGTTAGGCTACATGTCTCATGAAGAGGGCAAAAACTTTGTCCGCTT
TTCTCAAGAAGTGATTGATCGCTTTAACAGTTATGAGTGGCCGGGTAACGTCCGACAACTACAAAACGTACTACGCAATA
TCGTGGTGCTCAACAACGGCAAAGAAATTACGTTAGATATGTTGCCACCGCCGCTGAATCAACCGTTAGATAGGCCATCT
GTATCTAAACTGATTGAGCCAAAAGCGATGACTGTTTCAGAGATCATGCCGCTATGGATGACAGAGAAAATGGCGATTGA
GCAAGCGATTGAGGCGTGTGACGGCAATATTCCAAGAGCCGCTGGGTATCTTGATGTCAGTCCGTCAACGATTTACCGCA
AACTACAAGCATGGAATGGTAAAGAAGAGCGGCAGAAGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.5

95.931

0.839
  pilR Pseudomonas aeruginosa PAK

38.393

95.931

0.368