Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   Q7W79_RS08535 Genome accession   NZ_CP131931
Coordinates   153437..154015 (+) Length   192 a.a.
NCBI ID   WP_015297396.1    Uniprot ID   A0A243VIJ8
Organism   Vibrio parahaemolyticus strain RP0132     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 148437..159015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W79_RS08520 (Q7W79_08520) oxyR 148761..149669 (+) 909 WP_005465160.1 DNA-binding transcriptional regulator OxyR -
  Q7W79_RS08525 (Q7W79_08525) - 149725..152295 (-) 2571 WP_005480476.1 penicillin-binding protein 1A -
  Q7W79_RS08530 (Q7W79_08530) pilM 152438..153453 (+) 1016 Protein_127 type IV pilus biogenesis protein PilM -
  Q7W79_RS08535 (Q7W79_08535) pilN 153437..154015 (+) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  Q7W79_RS08540 (Q7W79_08540) pilO 154008..154601 (+) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q7W79_RS08545 (Q7W79_08545) pilP 154591..155106 (+) 516 WP_005480477.1 pilus assembly protein PilP Machinery gene
  Q7W79_RS08550 (Q7W79_08550) pilQ 155138..156886 (+) 1749 WP_025623689.1 type IV pilus secretin PilQ Machinery gene
  Q7W79_RS08555 (Q7W79_08555) aroK 157075..157593 (+) 519 WP_005381319.1 shikimate kinase AroK -
  Q7W79_RS08560 (Q7W79_08560) aroB 157625..158725 (+) 1101 WP_005480443.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22438.95 Da        Isoelectric Point: 6.9944

>NTDB_id=866330 Q7W79_RS08535 WP_015297396.1 153437..154015(+) (pilN) [Vibrio parahaemolyticus strain RP0132]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG

Nucleotide


Download         Length: 579 bp        

>NTDB_id=866330 Q7W79_RS08535 WP_015297396.1 153437..154015(+) (pilN) [Vibrio parahaemolyticus strain RP0132]
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGCTTAGTGGT
ATTGGGAGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A243VIJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

83.333

100

0.833
  pilN Vibrio cholerae strain A1552

62.983

94.271

0.594