Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   WHP77_RS07985 Genome accession   NZ_CP148153
Coordinates   1511310..1512083 (-) Length   257 a.a.
NCBI ID   WP_265604844.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323PCJ0002     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1506310..1517083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP77_RS07955 (WHP77_07955) aspS 1506494..1508245 (+) 1752 WP_002890710.1 aspartate--tRNA ligase -
  WHP77_RS07960 (WHP77_07960) adk 1508242..1508820 (+) 579 WP_002859580.1 adenylate kinase -
  WHP77_RS07965 (WHP77_07965) ppa 1508830..1509348 (+) 519 WP_002867724.1 inorganic diphosphatase -
  WHP77_RS07970 (WHP77_07970) msrA 1509389..1509886 (+) 498 WP_002890709.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WHP77_RS07975 (WHP77_07975) - 1510062..1510901 (-) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WHP77_RS07980 (WHP77_07980) dprB 1510930..1511313 (-) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  WHP77_RS07985 (WHP77_07985) dprA 1511310..1512083 (-) 774 WP_265604844.1 DNA-processing protein DprA Machinery gene
  WHP77_RS07990 (WHP77_07990) - 1512073..1513155 (-) 1083 WP_002864866.1 divergent polysaccharide deacetylase family protein -
  WHP77_RS07995 (WHP77_07995) ilvC 1513159..1514181 (-) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  WHP77_RS08000 (WHP77_08000) - 1514300..1516234 (+) 1935 WP_002890708.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28898.67 Da        Isoelectric Point: 7.0853

>NTDB_id=866330 WHP77_RS07985 WP_265604844.1 1511310..1512083(-) (dprA) [Campylobacter jejuni strain Z1323PCJ0002]
MASEIFPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKSKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=866330 WHP77_RS07985 WP_265604844.1 1511310..1512083(-) (dprA) [Campylobacter jejuni strain Z1323PCJ0002]
ATGGCAAGTGAAATTTTCCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGCAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAATCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.665

100

0.977
  dprA Helicobacter pylori 26695

48.75

93.385

0.455