Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   WHP77_RS07980 Genome accession   NZ_CP148153
Coordinates   1510930..1511313 (-) Length   127 a.a.
NCBI ID   WP_002858579.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323PCJ0002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1505930..1516313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP77_RS07955 (WHP77_07955) aspS 1506494..1508245 (+) 1752 WP_002890710.1 aspartate--tRNA ligase -
  WHP77_RS07960 (WHP77_07960) adk 1508242..1508820 (+) 579 WP_002859580.1 adenylate kinase -
  WHP77_RS07965 (WHP77_07965) ppa 1508830..1509348 (+) 519 WP_002867724.1 inorganic diphosphatase -
  WHP77_RS07970 (WHP77_07970) msrA 1509389..1509886 (+) 498 WP_002890709.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WHP77_RS07975 (WHP77_07975) - 1510062..1510901 (-) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WHP77_RS07980 (WHP77_07980) dprB 1510930..1511313 (-) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  WHP77_RS07985 (WHP77_07985) dprA 1511310..1512083 (-) 774 WP_265604844.1 DNA-processing protein DprA Machinery gene
  WHP77_RS07990 (WHP77_07990) - 1512073..1513155 (-) 1083 WP_002864866.1 divergent polysaccharide deacetylase family protein -
  WHP77_RS07995 (WHP77_07995) ilvC 1513159..1514181 (-) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  WHP77_RS08000 (WHP77_08000) - 1514300..1516234 (+) 1935 WP_002890708.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14064.61 Da        Isoelectric Point: 9.5430

>NTDB_id=866329 WHP77_RS07980 WP_002858579.1 1510930..1511313(-) (dprB) [Campylobacter jejuni strain Z1323PCJ0002]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=866329 WHP77_RS07980 WP_002858579.1 1510930..1511313(-) (dprB) [Campylobacter jejuni strain Z1323PCJ0002]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACTTGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449