Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   WHP36_RS04980 Genome accession   NZ_CP148151
Coordinates   942572..943345 (+) Length   257 a.a.
NCBI ID   WP_002866495.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323PCJ0003     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 937572..948345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP36_RS04965 (WHP36_04960) - 938421..940355 (-) 1935 WP_002876691.1 ribonuclease R family protein -
  WHP36_RS04970 (WHP36_04965) ilvC 940474..941496 (+) 1023 WP_002866493.1 ketol-acid reductoisomerase -
  WHP36_RS04975 (WHP36_04970) - 941500..942582 (+) 1083 WP_002876692.1 divergent polysaccharide deacetylase family protein -
  WHP36_RS04980 (WHP36_04975) dprA 942572..943345 (+) 774 WP_002866495.1 DNA-processing protein DprA Machinery gene
  WHP36_RS04985 (WHP36_04980) dprB 943342..943725 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  WHP36_RS04990 (WHP36_04985) - 943754..944593 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WHP36_RS04995 (WHP36_04990) msrA 944769..945266 (-) 498 WP_002866497.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WHP36_RS05000 (WHP36_04995) ppa 945307..945825 (-) 519 WP_002855031.1 inorganic diphosphatase -
  WHP36_RS05005 (WHP36_05000) adk 945835..946413 (-) 579 WP_002855137.1 adenylate kinase -
  WHP36_RS05010 (WHP36_05005) aspS 946410..948161 (-) 1752 WP_012006668.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28742.58 Da        Isoelectric Point: 7.6510

>NTDB_id=866263 WHP36_RS04980 WP_002866495.1 942572..943345(+) (dprA) [Campylobacter jejuni strain Z1323PCJ0003]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=866263 WHP36_RS04980 WP_002866495.1 942572..943345(+) (dprA) [Campylobacter jejuni strain Z1323PCJ0003]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATTGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCTAATGGTTTGGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTAGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGTACAGGGACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAATTGATTTGTGATTTCAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.222

100

0.992
  dprA Helicobacter pylori 26695

49.167

93.385

0.459