Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   WHP54_RS03140 Genome accession   NZ_CP148149
Coordinates   603867..604640 (+) Length   257 a.a.
NCBI ID   WP_002852253.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323PCJ0006     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 598867..609640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP54_RS03125 (WHP54_03125) - 599716..601650 (-) 1935 WP_002852122.1 ribonuclease R family protein -
  WHP54_RS03130 (WHP54_03130) ilvC 601769..602791 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  WHP54_RS03135 (WHP54_03135) - 602795..603877 (+) 1083 WP_002852295.1 divergent polysaccharide deacetylase family protein -
  WHP54_RS03140 (WHP54_03140) dprA 603867..604640 (+) 774 WP_002852253.1 DNA-processing protein DprA Machinery gene
  WHP54_RS03145 (WHP54_03145) dprB 604637..605020 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  WHP54_RS03150 (WHP54_03150) - 605049..605888 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WHP54_RS03155 (WHP54_03155) msrA 606065..606562 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WHP54_RS03160 (WHP54_03160) ppa 606604..607122 (-) 519 WP_002852138.1 inorganic diphosphatase -
  WHP54_RS03165 (WHP54_03165) adk 607132..607710 (-) 579 WP_002852182.1 adenylate kinase -
  WHP54_RS03170 (WHP54_03170) aspS 607707..609458 (-) 1752 WP_002852289.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28901.71 Da        Isoelectric Point: 7.7211

>NTDB_id=866156 WHP54_RS03140 WP_002852253.1 603867..604640(+) (dprA) [Campylobacter jejuni strain Z1323PCJ0006]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNRVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=866156 WHP54_RS03140 WP_002852253.1 603867..604640(+) (dprA) [Campylobacter jejuni strain Z1323PCJ0006]
ATGGCAAGTGAAATTTTGCCTGATGAGTTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATCGTG
TTTTTTCTTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

49.167

93.385

0.459