Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AABK22_RS03925 Genome accession   NZ_AP027506
Coordinates   807426..807902 (-) Length   158 a.a.
NCBI ID   WP_021566731.1    Uniprot ID   -
Organism   Escherichia coli strain LR-27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 802426..812902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK22_RS03890 (VEE09_07530) kpsS 803930..805150 (+) 1221 WP_000794251.1 capsular biosynthesis protein Regulator
  AABK22_RS03895 (VEE09_07540) - 805176..805406 (-) 231 Protein_765 hypothetical protein -
  AABK22_RS03900 - 805512..805688 (-) 177 WP_000839288.1 DUF957 domain-containing protein -
  AABK22_RS03905 (VEE09_07550) - 805705..806135 (-) 431 Protein_767 DUF5983 family protein -
  AABK22_RS03910 (VEE09_07560) - 806132..806509 (-) 378 WP_203396496.1 TA system toxin CbtA family protein -
  AABK22_RS03915 (VEE09_07570) - 806599..806979 (-) 381 WP_203396497.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AABK22_RS03920 (VEE09_07580) - 807142..807363 (-) 222 WP_000692315.1 DUF987 domain-containing protein -
  AABK22_RS03925 (VEE09_07590) radC 807426..807902 (-) 477 WP_021566731.1 RadC family protein Machinery gene
  AABK22_RS03930 (VEE09_07600) - 807918..808391 (-) 474 WP_203396498.1 antirestriction protein -
  AABK22_RS03935 (VEE09_07620) - 808730..809548 (-) 819 WP_203396499.1 DUF932 domain-containing protein -
  AABK22_RS03940 (VEE09_07630) - 809666..809861 (-) 196 Protein_774 DUF905 family protein -
  AABK22_RS03945 (VEE09_07640) - 809932..810957 (-) 1026 Protein_775 autotransporter domain-containing protein -
  AABK22_RS03950 - 810954..811376 (-) 423 Protein_776 transposase family protein -
  AABK22_RS03955 (VEE09_07650) - 811509..812009 (-) 501 WP_001301088.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17763.45 Da        Isoelectric Point: 7.6152

>NTDB_id=86603 AABK22_RS03925 WP_021566731.1 807426..807902(-) (radC) [Escherichia coli strain LR-27]
MQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=86603 AABK22_RS03925 WP_021566731.1 807426..807902(-) (radC) [Escherichia coli strain LR-27]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTTCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGCAAGGCAGACCGCCTTATCACTGAGCGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392

Multiple sequence alignment