Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   AABK22_RS03890 Genome accession   NZ_AP027506
Coordinates   803930..805150 (+) Length   406 a.a.
NCBI ID   WP_000794251.1    Uniprot ID   -
Organism   Escherichia coli strain LR-27     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 798930..810150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK22_RS03875 (VEE09_07500) rfbA 799073..799951 (+) 879 WP_203396495.1 glucose-1-phosphate thymidylyltransferase RfbA -
  AABK22_RS03880 (VEE09_07510) rfbC 800018..800569 (+) 552 WP_021526989.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  AABK22_RS03885 (VEE09_07520) - 800619..802766 (+) 2148 WP_000281770.1 capsular polysaccharide biosynthesis protein -
  AABK22_RS03890 (VEE09_07530) kpsS 803930..805150 (+) 1221 WP_000794251.1 capsular biosynthesis protein Regulator
  AABK22_RS03895 (VEE09_07540) - 805176..805406 (-) 231 Protein_765 hypothetical protein -
  AABK22_RS03900 - 805512..805688 (-) 177 WP_000839288.1 DUF957 domain-containing protein -
  AABK22_RS03905 (VEE09_07550) - 805705..806135 (-) 431 Protein_767 DUF5983 family protein -
  AABK22_RS03910 (VEE09_07560) - 806132..806509 (-) 378 WP_203396496.1 TA system toxin CbtA family protein -
  AABK22_RS03915 (VEE09_07570) - 806599..806979 (-) 381 WP_203396497.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AABK22_RS03920 (VEE09_07580) - 807142..807363 (-) 222 WP_000692315.1 DUF987 domain-containing protein -
  AABK22_RS03925 (VEE09_07590) radC 807426..807902 (-) 477 WP_021566731.1 RadC family protein Machinery gene
  AABK22_RS03930 (VEE09_07600) - 807918..808391 (-) 474 WP_203396498.1 antirestriction protein -
  AABK22_RS03935 (VEE09_07620) - 808730..809548 (-) 819 WP_203396499.1 DUF932 domain-containing protein -
  AABK22_RS03940 (VEE09_07630) - 809666..809861 (-) 196 Protein_774 DUF905 family protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 48437.92 Da        Isoelectric Point: 10.1710

>NTDB_id=86602 AABK22_RS03890 WP_000794251.1 803930..805150(+) (kpsS) [Escherichia coli strain LR-27]
MKNNALSILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRHYLAYYQTPKEFPGWLRDIHRQFD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEDGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFTRYRHHKSFSPWYEARCWGRAYWRKLFYKIMQRNVLARLVNDLDQRYYLVILQVYNDSQI
RNHSNYNDVRDYINEVVYSFSHKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTVGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFREYLLMKTQINAVYYGVKSKSNRRSA
FLNGSR

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=86602 AABK22_RS03890 WP_000794251.1 803930..805150(+) (kpsS) [Escherichia coli strain LR-27]
ATGAAAAATAATGCTCTGAGCATTTTATTATCTGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTCTTCAA
TGATGTTGCCGAGTGGTTAGAGTCATTAGGTCGTAACGCTGTGAATGTTGTATTCAATGGAGGGGATCGTTTTTACTGCC
GTCATCGACACTATCTGGCTTATTACCAAACGCCGAAAGAATTTCCTGGTTGGTTACGAGATATCCACCGGCAATTTGAC
TTTGATACCATTCTCTGTTTTGGTGACTGCCGTCCATTGCACAAAGAAGCAAAACGTTGGGCGAAGTCTAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAATTTATTACTGTTGAAGAGGACGGTGTAAACGCGTATTCATCGC
TGCCGCGCGATCCTGACTTTTATCGTAAATTACCAGATATGCCTGCACCACATGTTGAGAACTTAAAACCCTCGACGATG
AAACGTATTGGTCATGCAATGTGGTATTACCTGATGGGATGGCATTACCGACATGAATTCACTCGCTACCGTCATCACAA
ATCATTTTCTCCTTGGTATGAGGCTCGTTGCTGGGGGCGTGCGTACTGGCGTAAGCTATTTTACAAAATAATGCAACGTA
ATGTATTGGCTCGGTTAGTGAATGATCTGGACCAACGTTACTATCTTGTTATTTTACAAGTTTATAATGATAGCCAAATT
CGTAATCACAGTAATTATAATGATGTGCGTGATTATATTAACGAAGTTGTATATTCATTTTCGCATAAGGCACCGAAAGA
GAGTTATTTGGTGATCAAACACCATCCGATGGATCGCGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGCAAGG
AATATGGCTTAGGCGAGCGAGTCATATACGTACACGATCTCCCAATGCCGGAATTATTACGCCATGCAAAAGCGGTTGTG
ACAATTAACAGTACAGTGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGTAATGCTCTGTACGACAT
CAAGGGGTTGACGTATCAAGGGCATTTGCATCAATTCTGGCAGGCCGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGAATATTTATTGATGAAGACGCAAATTAATGCTGTTTATTATGGTGTAAAATCAAAAAGCAATAGAAGGTCCGCA
TTCCTAAACGGTAGCAGATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

95.813

0.382

Multiple sequence alignment