Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   Q7571_RS01500 Genome accession   NZ_CP131885
Coordinates   320013..320540 (+) Length   175 a.a.
NCBI ID   WP_072618027.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2008S11-069     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 315013..325540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7571_RS01485 (Q7571_01490) pilM 317566..318624 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  Q7571_RS01490 (Q7571_01495) pilN 318624..319265 (+) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  Q7571_RS01495 (Q7571_01500) pilO 319262..320002 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q7571_RS01500 (Q7571_01505) pilP 320013..320540 (+) 528 WP_072618027.1 pilus assembly protein PilP Machinery gene
  Q7571_RS01505 (Q7571_01510) pilQ 320608..322773 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  Q7571_RS01510 (Q7571_01515) aroK 322785..323354 (+) 570 WP_000643712.1 shikimate kinase AroK -
  Q7571_RS01515 (Q7571_01520) aroB 323383..324465 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  Q7571_RS01520 (Q7571_01525) - 324481..325356 (+) 876 WP_000218798.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19447.69 Da        Isoelectric Point: 8.9898

>NTDB_id=865747 Q7571_RS01500 WP_072618027.1 320013..320540(+) (pilP) [Acinetobacter baumannii strain 2008S11-069]
MKIKQITLYVLVCAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=865747 Q7571_RS01500 WP_072618027.1 320013..320540(+) (pilP) [Acinetobacter baumannii strain 2008S11-069]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGTGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

99.429

100

0.994
  comL Acinetobacter baylyi ADP1

72.515

97.714

0.709