Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   Q7571_RS01490 Genome accession   NZ_CP131885
Coordinates   318624..319265 (+) Length   213 a.a.
NCBI ID   WP_000201226.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2008S11-069     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 313624..324265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7571_RS01470 (Q7571_01475) - 313672..314004 (+) 333 WP_280010060.1 hypothetical protein -
  Q7571_RS01475 (Q7571_01480) - 314007..314831 (+) 825 WP_016686189.1 putative RNA methyltransferase -
  Q7571_RS01480 (Q7571_01485) ponA 314849..317404 (-) 2556 WP_280010061.1 penicillin-binding protein PBP1a -
  Q7571_RS01485 (Q7571_01490) pilM 317566..318624 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  Q7571_RS01490 (Q7571_01495) pilN 318624..319265 (+) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  Q7571_RS01495 (Q7571_01500) pilO 319262..320002 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q7571_RS01500 (Q7571_01505) pilP 320013..320540 (+) 528 WP_072618027.1 pilus assembly protein PilP Machinery gene
  Q7571_RS01505 (Q7571_01510) pilQ 320608..322773 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  Q7571_RS01510 (Q7571_01515) aroK 322785..323354 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23989.33 Da        Isoelectric Point: 5.3968

>NTDB_id=865745 Q7571_RS01490 WP_000201226.1 318624..319265(+) (pilN) [Acinetobacter baumannii strain 2008S11-069]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=865745 Q7571_RS01490 WP_000201226.1 318624..319265(+) (pilN) [Acinetobacter baumannii strain 2008S11-069]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

72.596

97.653

0.709