Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   Q7572_RS17895 Genome accession   NZ_CP131878
Coordinates   3670548..3671969 (+) Length   473 a.a.
NCBI ID   WP_004883635.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain 2014S01-097     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3665548..3676969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7572_RS17875 (Q7572_17910) thrC 3665803..3666942 (+) 1140 WP_002048893.1 threonine synthase -
  Q7572_RS17880 (Q7572_17915) pbpG 3667051..3668097 (-) 1047 WP_004710943.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  Q7572_RS17885 (Q7572_17920) - 3668309..3668944 (+) 636 WP_000633799.1 response regulator -
  Q7572_RS17890 (Q7572_17925) pilS 3668955..3670523 (+) 1569 WP_004883633.1 PAS domain-containing sensor histidine kinase Regulator
  Q7572_RS17895 (Q7572_17930) pilR 3670548..3671969 (+) 1422 WP_004883635.1 sigma-54 dependent transcriptional regulator Regulator
  Q7572_RS17900 (Q7572_17935) - 3671973..3673157 (-) 1185 WP_004883636.1 S41 family peptidase -
  Q7572_RS17905 (Q7572_17940) gpmI 3673173..3674720 (-) 1548 WP_004883637.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  Q7572_RS17910 (Q7572_17945) lptG 3674846..3675916 (-) 1071 WP_002048976.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53171.43 Da        Isoelectric Point: 6.6690

>NTDB_id=865738 Q7572_RS17895 WP_004883635.1 3670548..3671969(+) (pilR) [Acinetobacter nosocomialis strain 2014S01-097]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKIEHDFAESALENKLLIGRSQPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLMLPPLRERGEDVLL
LANHFIQKICMEWETPLKQLTEGAETYLLQQHFPGNVRELRNMIERAITLSDDANIDVPHLHPAPLRANISNSIAMVSQS
LQNPVATPQIVKKLPSEGLERYLESIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=865738 Q7572_RS17895 WP_004883635.1 3670548..3671969(+) (pilR) [Acinetobacter nosocomialis strain 2014S01-097]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAGGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACACAGTTTCATTACGATGCATGTT
TAACCGATCTAAACTTACCCGATGGGAGTGGGTTAGAGTTAGTCAAACATGTCTCTCAAAATTATACAAACACACCCATT
GCGGTTTTAACTGCTTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGCGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAGAAAGCCTTAAATCGGCAAAAAATAGAGCATGATTTTGCAGAGAGTG
CTCTAGAAAACAAATTATTAATCGGCCGCTCTCAGCCTATTCAACAACTACGCATCGCAATTAAAAAAATTGCGCGCTCA
CAAGCACCTGTATTTGTTACTGGCGAGTCTGGAACAGGTAAAGAAGTGGTTGCCAACCTAGTTCATCGGCTGAGTAACCG
TAGTGAAGGGCCTTTTATTGCGATTAACTGTGGCGCTATTCCAACTGAACTGATGGAAAGCGAGCTGTTCGGACATAAAA
AAGGCAGTTTTACTGGAGCGACTCAAGACAAACAGGGCCTCATTTTATCTGCTCATGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCACTTAGTATGCAGGTTAAATTACTACGCGCAGTACAAGAAAAAAAGATTCGTCCTGTCGGTTCTGA
TCAGGAAATTGATGTTGATTTTCGAGTGATTAGCGCGAGTCATCAAGACTTAGATTTATTGGTTCGACAAGGCAAATTTC
GTCAGGATTTATTCTTCCGTATCCATGTTATGGATCTCATGTTACCGCCTTTACGCGAACGTGGTGAAGATGTCTTGTTA
CTTGCGAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACCCCACTTAAACAATTAACCGAGGGCGCTGAAACTTA
TCTGCTACAACAACACTTTCCCGGCAATGTTCGCGAATTAAGAAATATGATTGAGCGAGCAATTACTTTAAGTGACGATG
CCAATATTGATGTACCGCATTTGCACCCTGCTCCTTTAAGAGCAAATATTTCTAATTCAATCGCAATGGTATCTCAAAGC
TTGCAGAATCCCGTAGCTACTCCACAGATTGTAAAAAAATTACCAAGTGAGGGTCTAGAGCGTTATTTAGAGAGTATTGA
AAAAGATATTCTGCTCAATGCACTCAATATGACCCATTGGAATCGAACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GTTCTTTACGCTACCGTTTGAAGAAATTTGGGTTAGATACTGAAACTGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

94.715

100

0.947
  pilR Pseudomonas aeruginosa PAK

50.433

97.674

0.493