Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Q7572_RS02215 Genome accession   NZ_CP131878
Coordinates   472319..472954 (-) Length   211 a.a.
NCBI ID   WP_151276927.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain 2014S01-097     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 467319..477954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7572_RS02180 (Q7572_02185) mlaE 467648..468424 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  Q7572_RS02185 (Q7572_02190) - 468424..469107 (+) 684 WP_002049738.1 outer membrane lipid asymmetry maintenance protein MlaD -
  Q7572_RS02190 (Q7572_02195) - 469134..469775 (+) 642 WP_002049753.1 ABC transporter substrate-binding protein -
  Q7572_RS02195 (Q7572_02200) - 469787..470074 (+) 288 WP_000250997.1 STAS domain-containing protein -
  Q7572_RS02200 (Q7572_02205) - 470148..471161 (-) 1014 WP_002049699.1 CorA family divalent cation transporter -
  Q7572_RS02205 (Q7572_02210) - 471319..471900 (+) 582 WP_002049746.1 TIGR00730 family Rossman fold protein -
  Q7572_RS02210 (Q7572_02215) - 471915..472316 (+) 402 WP_004884602.1 NUDIX domain-containing protein -
  Q7572_RS02215 (Q7572_02220) comF 472319..472954 (-) 636 WP_151276927.1 phosphoribosyltransferase family protein Machinery gene
  Q7572_RS02220 (Q7572_02225) recG 472947..474992 (-) 2046 WP_004884596.1 ATP-dependent DNA helicase RecG -
  Q7572_RS02225 (Q7572_02230) - 475013..475828 (+) 816 WP_004884592.1 NAD(P)H-binding protein -
  Q7572_RS02230 (Q7572_02235) adeT2 475907..476893 (+) 987 WP_004711792.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24608.86 Da        Isoelectric Point: 9.9089

>NTDB_id=865712 Q7572_RS02215 WP_151276927.1 472319..472954(-) (comF) [Acinetobacter nosocomialis strain 2014S01-097]
MFKLFNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTVQRNDQSVLVACHYAYPINRIIQQLKYEQKLHYQTL
LAEVLQQIKFPKIQAIVPMPISKQRLTERGFNQSLLLAKLLSKQLKIPVWQPVQRLNERSQKGLSRLERFENIEQQFVAM
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=865712 Q7572_RS02215 WP_151276927.1 472319..472954(-) (comF) [Acinetobacter nosocomialis strain 2014S01-097]
ATGTTTAAGTTGTTCAACCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTATTATGTGAAATAGGAACACGGGAAAA
ATATTCACTTTGTAAAGAATGTTGGGAACAACTACCGTGGCTTAAGCAAACAGTTCAGCGCAATGATCAATCTGTTCTTG
TGGCTTGCCACTACGCATATCCAATTAATCGCATAATTCAGCAGTTAAAATATGAACAAAAATTACACTATCAAACCTTA
CTTGCCGAAGTCTTACAGCAAATAAAATTTCCTAAGATACAAGCCATAGTACCTATGCCTATTTCTAAACAACGCTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAAACTTTTAAGTAAACAATTAAAAATACCTGTTTGGCAGCCTGTGC
AGCGCCTAAATGAACGCTCTCAAAAAGGATTGTCTCGCCTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCTATG
ACTCAAGAAAAACGGCGTTACCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCACTAAAACAGCTAGGGTGCACATCTATTTATGCAAGTTGCCTAGCTGCTGCCTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

95.261

100

0.953
  comF Acinetobacter baumannii D1279779

94.313

100

0.943