Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   Q7574_RS09635 Genome accession   NZ_CP131867
Coordinates   2017882..2018262 (-) Length   126 a.a.
NCBI ID   WP_002121425.1    Uniprot ID   A0A009HD22
Organism   Acinetobacter pittii strain 2012N08-034     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2012882..2023262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7574_RS09610 (Q7574_09655) hibch 2013395..2014519 (-) 1125 WP_206260669.1 enoyl-CoA hydratase/isomerase family protein -
  Q7574_RS09615 (Q7574_09660) ung 2014516..2015229 (-) 714 WP_005069527.1 uracil-DNA glycosylase -
  Q7574_RS09620 (Q7574_09665) - 2015283..2015879 (-) 597 WP_002121363.1 6-carboxytetrahydropterin synthase -
  Q7574_RS09625 (Q7574_09670) gspK 2016107..2017066 (-) 960 WP_017482270.1 type II secretion system minor pseudopilin GspK -
  Q7574_RS09630 (Q7574_09675) xcpW 2017067..2017882 (-) 816 WP_174723748.1 type II secretion system minor pseudopilin GspJ Machinery gene
  Q7574_RS09635 (Q7574_09680) xcpV 2017882..2018262 (-) 381 WP_002121425.1 type II secretion system minor pseudopilin GspI Machinery gene
  Q7574_RS09640 (Q7574_09685) - 2018252..2018806 (-) 555 WP_002121405.1 type II secretion system protein -
  Q7574_RS09645 (Q7574_09690) - 2018813..2019421 (-) 609 WP_005069536.1 TetR/AcrR family transcriptional regulator -
  Q7574_RS09650 (Q7574_09695) ycfH 2019458..2020231 (-) 774 WP_005069538.1 TatD family hydrolase -
  Q7574_RS09655 (Q7574_09700) pilZ 2020249..2020590 (-) 342 WP_002121335.1 PilZ domain-containing protein -
  Q7574_RS09660 (Q7574_09705) holB 2020601..2021581 (-) 981 WP_017482275.1 DNA polymerase III subunit delta' -
  Q7574_RS09665 (Q7574_09710) kdsB 2021595..2022356 (-) 762 WP_174723750.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.17 Da        Isoelectric Point: 9.4463

>NTDB_id=865630 Q7574_RS09635 WP_002121425.1 2017882..2018262(-) (xcpV) [Acinetobacter pittii strain 2012N08-034]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=865630 Q7574_RS09635 WP_002121425.1 2017882..2018262(-) (xcpV) [Acinetobacter pittii strain 2012N08-034]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTAGCGGCCGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACCAAGGCTCAGTTTGTAGCAATGAATGAAATTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAAAGTAAGCAAGTTACTTCTCAAGGCGAAACATGGCAGATT
GACAAATCTGCACAATCTACAATTAGCCCGAATGTTCAGAAAGTTGATTTGCAAATTAGCTTATATGATTCTGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTGTTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HD22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937