Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Q7574_RS02115 Genome accession   NZ_CP131867
Coordinates   441886..442515 (-) Length   209 a.a.
NCBI ID   WP_005067250.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 2012N08-034     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 436886..447515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7574_RS02080 (Q7574_02080) mlaE 437218..437994 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  Q7574_RS02085 (Q7574_02085) - 437994..438674 (+) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  Q7574_RS02090 (Q7574_02090) - 438701..439342 (+) 642 WP_002116826.1 ABC transporter substrate-binding protein -
  Q7574_RS02095 (Q7574_02095) - 439354..439641 (+) 288 WP_005078357.1 STAS domain-containing protein -
  Q7574_RS02100 (Q7574_02100) - 439715..440728 (-) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  Q7574_RS02105 (Q7574_02105) - 440887..441468 (+) 582 WP_005067248.1 TIGR00730 family Rossman fold protein -
  Q7574_RS02110 (Q7574_02110) mutT 441483..441884 (+) 402 WP_002116701.1 NUDIX domain-containing protein -
  Q7574_RS02115 (Q7574_02115) comF 441886..442515 (-) 630 WP_005067250.1 phosphoribosyltransferase family protein Machinery gene
  Q7574_RS02120 (Q7574_02120) recG 442508..444553 (-) 2046 WP_046811835.1 ATP-dependent DNA helicase RecG -
  Q7574_RS02125 (Q7574_02125) - 444574..445389 (+) 816 WP_342063587.1 NAD-dependent epimerase/dehydratase family protein -
  Q7574_RS02130 (Q7574_02130) - 445468..446451 (+) 984 WP_151282626.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24405.57 Da        Isoelectric Point: 9.9489

>NTDB_id=865621 Q7574_RS02115 WP_005067250.1 441886..442515(-) (comF) [Acinetobacter pittii strain 2012N08-034]
MFNFLNFQPLIQLFSPCSLCELGIREKYSLCKDCWEQLPWLKQTIQRNNQSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLVLANILSKHLKIPVWQPIQRLNEHSQKGLSRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=865621 Q7574_RS02115 WP_005067250.1 441886..442515(-) (comF) [Acinetobacter pittii strain 2012N08-034]
ATGTTTAATTTTTTAAACTTTCAACCTCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCATACGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCAATCTGTTCTTG
TGGCCTGTAATTATGCTTATCCGGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAGATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCGATCGTACCTATGCCCATTTCCAATCAACGTTTAAT
CGAGCGTGGTTTCAATCAATCCTTAGTACTCGCCAATATATTAAGCAAACACTTAAAAATACCTGTTTGGCAACCAATTC
AACGCTTAAATGAACACTCTCAAAAAGGACTTTCTCGGCTAGAACGCTTTGAAAATATCGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACAGGAAGCTCTGTTCATGCGCTCAG
TCAGGCACTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCAGCGACGCCGAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

84.211

100

0.842
  comF Acinetobacter baumannii D1279779

83.254

100

0.833