Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   Q7574_RS01750 Genome accession   NZ_CP131867
Coordinates   368901..369338 (+) Length   145 a.a.
NCBI ID   WP_342063573.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 2012N08-034     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 363901..374338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7574_RS01740 (Q7574_01740) - 364618..365331 (+) 714 WP_342063959.1 pilus assembly protein PilX -
  Q7574_RS01745 (Q7574_01745) - 365347..368889 (+) 3543 WP_342063572.1 hypothetical protein -
  Q7574_RS01750 (Q7574_01750) comE 368901..369338 (+) 438 WP_342063573.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  Q7574_RS01755 (Q7574_01755) pilE 369332..369793 (+) 462 WP_342063574.1 type IV pilin protein Machinery gene
  Q7574_RS01760 (Q7574_01760) rpsP 369942..370193 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  Q7574_RS01765 (Q7574_01765) rimM 370213..370761 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  Q7574_RS01770 (Q7574_01770) trmD 370804..371559 (+) 756 WP_342063575.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  Q7574_RS01775 (Q7574_01775) rplS 371779..372147 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  Q7574_RS01780 (Q7574_01780) lip 372199..373140 (-) 942 WP_342063960.1 triacylglycerol lipase -
  Q7574_RS01785 (Q7574_01785) - 373256..374287 (-) 1032 WP_342063576.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16026.48 Da        Isoelectric Point: 9.8920

>NTDB_id=865619 Q7574_RS01750 WP_342063573.1 368901..369338(+) (comE) [Acinetobacter pittii strain 2012N08-034]
MKNQGFTLIEVMVAVVIVAILVAIALPSYQAYVWRTEASQAQQEMLRIASLLERHKARNFSYKGFDLTTLAVRVPRTYTF
TLKDGTDTTKLLSATDALGRSWVLKVTTSNAQNYNFLLTSTGLQCKNTTVANVTYTSCGTGGMSW

Nucleotide


Download         Length: 438 bp        

>NTDB_id=865619 Q7574_RS01750 WP_342063573.1 368901..369338(+) (comE) [Acinetobacter pittii strain 2012N08-034]
ATGAAAAATCAGGGTTTCACCTTAATTGAAGTAATGGTGGCCGTGGTGATTGTTGCTATTTTAGTTGCAATCGCACTGCC
ATCTTATCAAGCCTATGTCTGGAGAACAGAGGCCTCACAAGCACAACAGGAAATGTTGCGTATAGCATCGTTACTTGAAA
GACATAAAGCGCGTAATTTTAGTTACAAAGGATTTGACTTAACTACTCTGGCTGTAAGAGTACCAAGAACATATACTTTT
ACCTTAAAAGATGGGACAGATACGACAAAGCTATTAAGCGCGACTGATGCTTTAGGGCGTTCATGGGTGTTAAAAGTGAC
GACCTCAAATGCTCAAAATTATAACTTTCTACTTACAAGCACTGGTCTTCAATGTAAAAACACTACAGTTGCTAATGTGA
CTTATACCAGTTGTGGTACAGGGGGAATGTCATGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-26)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(27-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

46.951

100

0.531
  pilY2 Acinetobacter baumannii D1279779

47.368

100

0.497