Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   Q7592_RS06910 Genome accession   NZ_CP131782
Coordinates   1403092..1403964 (-) Length   290 a.a.
NCBI ID   WP_034040535.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2016N06-105     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1398092..1408964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7592_RS06865 (Q7592_06865) - 1398953..1399123 (-) 171 WP_003094672.1 DUF3094 family protein -
  Q7592_RS06870 (Q7592_06870) - 1399149..1399598 (-) 450 WP_003094670.1 MOSC domain-containing protein -
  Q7592_RS06875 (Q7592_06875) - 1399595..1400224 (-) 630 WP_003094668.1 DUF1780 domain-containing protein -
  Q7592_RS06880 (Q7592_06880) - 1400357..1400782 (+) 426 WP_009875877.1 GNAT family N-acetyltransferase -
  Q7592_RS06885 (Q7592_06885) - 1400779..1401249 (+) 471 WP_034040530.1 hypothetical protein -
  Q7592_RS06890 (Q7592_06890) - 1401246..1401935 (+) 690 WP_003103868.1 energy-coupling factor ABC transporter permease -
  Q7592_RS06895 (Q7592_06895) - 1402041..1402250 (+) 210 WP_003094660.1 hypothetical protein -
  Q7592_RS06900 (Q7592_06900) yacG 1402287..1402487 (-) 201 WP_003094656.1 DNA gyrase inhibitor YacG -
  Q7592_RS06905 (Q7592_06905) coaE 1402484..1403095 (-) 612 WP_034040533.1 dephospho-CoA kinase -
  Q7592_RS06910 (Q7592_06910) pilD 1403092..1403964 (-) 873 WP_034040535.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  Q7592_RS06915 (Q7592_06915) pilC 1403968..1405188 (-) 1221 WP_003112840.1 type 4a pilus biogenesis protein PilC Machinery gene
  Q7592_RS06920 (Q7592_06920) pilB 1405192..1406892 (-) 1701 WP_003112841.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q7592_RS06925 (Q7592_06925) pilA 1407124..1407573 (+) 450 WP_003112842.1 type 4a pilus biogenesis protein PilA Machinery gene
  Q7592_RS06935 (Q7592_06935) nadC 1407775..1408623 (-) 849 WP_003116246.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 31756.82 Da        Isoelectric Point: 7.6612

>NTDB_id=864961 Q7592_RS06910 WP_034040535.1 1403092..1403964(-) (pilD) [Pseudomonas aeruginosa strain 2016N06-105]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTCQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide


Download         Length: 873 bp        

>NTDB_id=864961 Q7592_RS06910 WP_034040535.1 1403092..1403964(-) (pilD) [Pseudomonas aeruginosa strain 2016N06-105]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGTCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)

Type IV leader peptidase family (Peptidase_A24)

(137-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

55.714

96.552

0.538
  pilD Vibrio campbellii strain DS40M4

53.004

97.586

0.517
  pilD Acinetobacter nosocomialis M2

50.53

97.586

0.493
  pilD Acinetobacter baumannii D1279779

50.53

97.586

0.493
  pilD Neisseria gonorrhoeae MS11

48.921

95.862

0.469