Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   Q7609_RS00265 Genome accession   NZ_CP131725
Coordinates   55698..56381 (-) Length   227 a.a.
NCBI ID   WP_005651547.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2018S05-172     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 50698..61381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7609_RS00250 (Q7609_00250) nrdR 51488..51937 (-) 450 WP_005651549.1 transcriptional regulator NrdR -
  Q7609_RS00255 (Q7609_00255) recC 52019..55372 (-) 3354 WP_005651548.1 exodeoxyribonuclease V subunit gamma -
  Q7609_RS00260 (Q7609_00260) comQ 55418..55705 (-) 288 WP_005648029.1 DUF5374 domain-containing protein Machinery gene
  Q7609_RS00265 (Q7609_00265) comP 55698..56381 (-) 684 WP_005651547.1 DUF2572 family protein Machinery gene
  Q7609_RS00270 (Q7609_00270) comO 56396..57112 (-) 717 WP_005651546.1 type II secretion system protein J Machinery gene
  Q7609_RS00275 (Q7609_00275) comN 57112..57624 (-) 513 WP_005651545.1 type II secretion system protein Machinery gene
  Q7609_RS00280 (Q7609_00280) suhB 57824..58627 (+) 804 WP_005651543.1 inositol-1-monophosphatase -
  Q7609_RS00285 (Q7609_00285) nrfE 58737..60644 (+) 1908 WP_005651541.1 heme lyase NrfEFG subunit NrfE -
  Q7609_RS00290 (Q7609_00290) - 60641..61171 (+) 531 WP_032822961.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25638.44 Da        Isoelectric Point: 8.9108

>NTDB_id=864850 Q7609_RS00265 WP_005651547.1 55698..56381(-) (comP) [Haemophilus influenzae strain 2018S05-172]
MTTQKGIITLTILIFISGLLTAFLLLDDNHLSFFRAQQNQRKHYVERTLQLQKMTEEKKQTACIDLPLNNNERVKQISIA
LEGAADAIQYFLWCERMSLFKKSPKKGDNQGALKDFVTDEKLAYFRPHFSSPPRILNANKMPKLYWFSDSQTEVEINGTV
SAVLIAEGDLKLTGKGRISGAVITSGNLTLDGVTLAYGKKTVVALVQQYSQWQLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=864850 Q7609_RS00265 WP_005651547.1 55698..56381(-) (comP) [Haemophilus influenzae strain 2018S05-172]
ATGACAACACAAAAAGGCATTATCACGCTGACTATTCTGATTTTTATTTCAGGTTTATTAACTGCGTTTTTATTGTTGGA
TGACAACCATTTAAGTTTTTTTCGTGCACAACAAAATCAACGAAAACACTATGTGGAAAGAACATTACAACTACAAAAAA
TGACAGAGGAGAAAAAACAAACTGCCTGTATTGATTTACCCTTAAATAATAATGAAAGAGTGAAGCAAATCAGCATCGCC
CTTGAGGGTGCCGCCGATGCAATTCAATATTTTCTTTGGTGTGAAAGAATGAGCCTATTTAAAAAATCGCCTAAAAAGGG
AGATAATCAAGGCGCATTGAAAGATTTTGTGACTGACGAAAAACTTGCCTATTTTCGACCGCACTTTTCTTCCCCGCCCA
GAATTTTAAACGCGAATAAAATGCCTAAACTGTATTGGTTTTCAGATTCACAAACAGAAGTTGAAATTAATGGCACCGTG
TCTGCCGTATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGGATTAGTGGTGCAGTGATTACCAGCGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTGGTTGCTTTAGTGCAACAATATAGTCAGTGGCAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

96.035

100

0.96