Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   Q7609_RS00260 Genome accession   NZ_CP131725
Coordinates   55418..55705 (-) Length   95 a.a.
NCBI ID   WP_005648029.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2018S05-172     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 50418..60705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7609_RS00250 (Q7609_00250) nrdR 51488..51937 (-) 450 WP_005651549.1 transcriptional regulator NrdR -
  Q7609_RS00255 (Q7609_00255) recC 52019..55372 (-) 3354 WP_005651548.1 exodeoxyribonuclease V subunit gamma -
  Q7609_RS00260 (Q7609_00260) comQ 55418..55705 (-) 288 WP_005648029.1 DUF5374 domain-containing protein Machinery gene
  Q7609_RS00265 (Q7609_00265) comP 55698..56381 (-) 684 WP_005651547.1 DUF2572 family protein Machinery gene
  Q7609_RS00270 (Q7609_00270) comO 56396..57112 (-) 717 WP_005651546.1 type II secretion system protein J Machinery gene
  Q7609_RS00275 (Q7609_00275) comN 57112..57624 (-) 513 WP_005651545.1 type II secretion system protein Machinery gene
  Q7609_RS00280 (Q7609_00280) suhB 57824..58627 (+) 804 WP_005651543.1 inositol-1-monophosphatase -
  Q7609_RS00285 (Q7609_00285) nrfE 58737..60644 (+) 1908 WP_005651541.1 heme lyase NrfEFG subunit NrfE -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 11003.78 Da        Isoelectric Point: 9.2205

>NTDB_id=864849 Q7609_RS00260 WP_005648029.1 55418..55705(-) (comQ) [Haemophilus influenzae strain 2018S05-172]
MNKGISFITLLFSLALFSVLFLVFNQWTASQRKSAVKTYQDFQAIQIAENQAQRQFLGLACEQLIQQNGLTFRIQCENER
IIVRYPTSEILIKTQ

Nucleotide


Download         Length: 288 bp        

>NTDB_id=864849 Q7609_RS00260 WP_005648029.1 55418..55705(-) (comQ) [Haemophilus influenzae strain 2018S05-172]
ATGAATAAAGGAATATCTTTTATTACATTGTTATTTTCTTTAGCTTTATTTAGCGTTTTATTTCTTGTTTTTAATCAATG
GACGGCAAGCCAAAGAAAAAGTGCGGTAAAAACTTATCAAGATTTTCAGGCAATACAGATTGCGGAGAATCAAGCTCAAC
GCCAATTTTTAGGGTTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTATTCAATGTGAAAATGAACGT
ATTATTGTGCGTTATCCTACGAGTGAAATTTTGATAAAAACTCAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

96.842

100

0.968