Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF/pilF2   Type   Machinery gene
Locus tag   Q7611_RS03635 Genome accession   NZ_CP131723
Coordinates   715181..715720 (-) Length   179 a.a.
NCBI ID   WP_065245016.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2018C08-260     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 710181..720720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7611_RS03605 (Q7611_03605) fdx 710584..710925 (+) 342 WP_118806694.1 ISC system 2Fe-2S type ferredoxin -
  Q7611_RS03610 (Q7611_03610) iscX 710925..711119 (+) 195 WP_005659903.1 Fe-S cluster assembly protein IscX -
  Q7611_RS03615 (Q7611_03615) - 711170..711784 (-) 615 WP_005693794.1 YfgM family protein -
  Q7611_RS03620 (Q7611_03620) hisS 711802..713073 (-) 1272 WP_342122209.1 histidine--tRNA ligase -
  Q7611_RS03625 (Q7611_03625) ispG 713083..714189 (-) 1107 WP_105897010.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  Q7611_RS03630 (Q7611_03630) - 714198..715109 (-) 912 WP_005688933.1 RodZ family helix-turn-helix domain-containing protein -
  Q7611_RS03635 (Q7611_03635) pilF/pilF2 715181..715720 (-) 540 WP_065245016.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  Q7611_RS03640 (Q7611_03640) - 715821..716972 (-) 1152 WP_342122217.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  Q7611_RS03645 (Q7611_03645) - 717217..718095 (+) 879 WP_342122220.1 serine hydrolase -
  Q7611_RS03650 (Q7611_03650) - 718461..719342 (+) 882 WP_005662662.1 metal ABC transporter substrate-binding protein -
  Q7611_RS03655 (Q7611_03655) - 719342..720262 (+) 921 WP_005662663.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 20559.17 Da        Isoelectric Point: 8.2626

>NTDB_id=864795 Q7611_RS03635 WP_065245016.1 715181..715720(-) (pilF/pilF2) [Haemophilus influenzae strain 2018C08-260]
MKTISKQLSAVIFPFIFSACVSQSASSLNHQAAAKARVELALSYLQQNNPQLAKINLDKALQHDKNYYLVHSALAHYYQQ
QGEIENAHREYEIAVNLNHKQGDVHNNFGTFLCSQKKFEQAQQQFELALNSPNYYHQADTFENIVLCAYSAQKMDIYQQT
LEKLRQIDGKRAEKFNSLK

Nucleotide


Download         Length: 540 bp        

>NTDB_id=864795 Q7611_RS03635 WP_065245016.1 715181..715720(-) (pilF/pilF2) [Haemophilus influenzae strain 2018C08-260]
ATGAAAACAATAAGTAAACAACTAAGTGCGGTTATTTTTCCTTTTATTTTTTCTGCCTGCGTTTCACAATCTGCATCTAG
CTTAAATCATCAAGCTGCCGCTAAAGCGCGTGTGGAACTCGCTTTGAGCTATCTTCAGCAAAATAATCCTCAACTGGCTA
AAATCAATTTAGATAAAGCACTTCAACACGATAAAAATTACTATCTCGTGCATTCAGCACTTGCACATTATTATCAACAA
CAAGGGGAAATAGAGAATGCACATCGTGAATATGAAATAGCCGTAAACCTTAATCATAAACAAGGCGATGTGCATAATAA
TTTTGGTACGTTTCTATGTAGTCAAAAGAAATTTGAACAAGCCCAGCAACAATTTGAATTAGCACTTAATTCGCCAAATT
ATTATCATCAAGCAGATACATTTGAAAATATCGTGCTTTGTGCTTATTCCGCGCAAAAAATGGATATTTATCAGCAAACA
TTAGAAAAATTACGTCAAATCGATGGAAAACGTGCGGAAAAATTCAATAGCCTAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF/pilF2 Haemophilus influenzae Rd KW20

98.324

100

0.983
  pilF Glaesserella parasuis strain SC1401

44.693

100

0.447