Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   Q7613_RS02890 Genome accession   NZ_CP131720
Coordinates   583364..583777 (+) Length   137 a.a.
NCBI ID   WP_070828390.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016N07-308     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 578364..588777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7613_RS02870 (Q7613_02870) - 578852..581446 (-) 2595 WP_070828392.1 penicillin-binding protein 1A -
  Q7613_RS02875 (Q7613_02875) comA 581545..582342 (+) 798 WP_011272050.1 pilus assembly protein PilM Machinery gene
  Q7613_RS02880 (Q7613_02880) comB 582343..582849 (+) 507 WP_011272049.1 competence protein ComB Machinery gene
  Q7613_RS02885 (Q7613_02885) comC 582846..583367 (+) 522 WP_070828391.1 competence protein ComC Machinery gene
  Q7613_RS02890 (Q7613_02890) comD 583364..583777 (+) 414 WP_070828390.1 pilus assembly protein PilP Machinery gene
  Q7613_RS02895 (Q7613_02895) comE 583787..585124 (+) 1338 WP_011272046.1 type IV pilus secretin PilQ Machinery gene
  Q7613_RS02900 (Q7613_02900) - 585137..585823 (+) 687 WP_011272045.1 ComF family protein -
  Q7613_RS02905 (Q7613_02905) nfuA 585899..586495 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -
  Q7613_RS02910 (Q7613_02910) nudC 586562..587356 (+) 795 WP_005686893.1 NAD(+) diphosphatase -
  Q7613_RS02915 (Q7613_02915) - 587392..587982 (+) 591 WP_005686892.1 YjaG family protein -
  Q7613_RS02920 (Q7613_02920) - 588122..588394 (+) 273 WP_005630954.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15629.73 Da        Isoelectric Point: 4.4355

>NTDB_id=864718 Q7613_RS02890 WP_070828390.1 583364..583777(+) (comD) [Haemophilus influenzae strain 2016N07-308]
MKYWFFLTALLFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=864718 Q7613_RS02890 WP_070828390.1 583364..583777(+) (comD) [Haemophilus influenzae strain 2016N07-308]
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Haemophilus influenzae 86-028NP

95.62

100

0.956
  comD Haemophilus influenzae Rd KW20

94.891

100

0.949