Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   WHO32_RS06870 Genome accession   NZ_CP148112
Coordinates   1315455..1316591 (+) Length   378 a.a.
NCBI ID   WP_010886491.1    Uniprot ID   Q00828
Organism   Bacillus subtilis isolate FELIX_MS504     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1310455..1321591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO32_RS06850 uxaA 1310905..1312398 (+) 1494 WP_003245409.1 UxaA family hydrolase -
  WHO32_RS06855 yjnA 1312437..1313201 (-) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  WHO32_RS06860 yjoA 1313426..1313890 (-) 465 WP_003245144.1 DinB family protein -
  WHO32_RS06865 yjoB 1314039..1315310 (+) 1272 WP_003245490.1 ATPase YjoB -
  WHO32_RS06870 rapC 1315455..1316591 (+) 1137 WP_010886491.1 response regulator aspartate phosphatase RapA Regulator
  WHO32_RS06875 phrA 1316581..1316715 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  WHO32_RS06880 yjpA 1316746..1317003 (-) 258 WP_003232731.1 YciI family protein -
  WHO32_RS06885 xlyB 1317124..1318077 (+) 954 WP_003244876.1 N-acetylmuramoyl-L-alanine amidase -
  WHO32_RS06890 yjqA 1318117..1318494 (-) 378 WP_003245254.1 PH domain-containing protein -
  WHO32_RS06895 pghB 1318600..1319202 (+) 603 WP_003244789.1 poly-gamma-glutamate hydrolase family protein -
  WHO32_RS06900 xpdC 1319279..1320115 (+) 837 WP_003245071.1 manganese catalase family protein -
  WHO32_RS06905 xkdA 1320159..1320755 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  WHO32_RS06910 xre 1320918..1321259 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44974.16 Da        Isoelectric Point: 4.7611

>NTDB_id=864597 WHO32_RS06870 WP_010886491.1 1315455..1316591(+) (rapC) [Bacillus subtilis isolate FELIX_MS504]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFGKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=864597 WHO32_RS06870 WP_010886491.1 1315455..1316591(+) (rapC) [Bacillus subtilis isolate FELIX_MS504]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGGGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-293)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q00828

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.681

99.471

0.444
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418