Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   Q7616_RS00280 Genome accession   NZ_CP131717
Coordinates   57202..57885 (-) Length   227 a.a.
NCBI ID   WP_112103685.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016N21-284     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52202..62885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7616_RS00265 (Q7616_00265) nrdR 52992..53441 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  Q7616_RS00270 (Q7616_00270) recC 53496..56876 (-) 3381 WP_112103686.1 exodeoxyribonuclease V subunit gamma -
  Q7616_RS00275 (Q7616_00275) comQ 56922..57209 (-) 288 WP_012055313.1 DUF5374 domain-containing protein Machinery gene
  Q7616_RS00280 (Q7616_00280) comP 57202..57885 (-) 684 WP_112103685.1 DUF2572 family protein Machinery gene
  Q7616_RS00285 (Q7616_00285) comO 57900..58616 (-) 717 WP_005651546.1 type II secretion system protein J Machinery gene
  Q7616_RS00290 (Q7616_00290) comN 58616..59128 (-) 513 WP_112103684.1 type II secretion system protein Machinery gene
  Q7616_RS00295 (Q7616_00295) suhB 59328..60131 (+) 804 WP_342120207.1 inositol-1-monophosphatase -
  Q7616_RS00300 (Q7616_00300) nrfE 60240..62147 (+) 1908 WP_112103683.1 heme lyase NrfEFG subunit NrfE -
  Q7616_RS00305 (Q7616_00305) - 62147..62677 (+) 531 WP_006995595.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25358.33 Da        Isoelectric Point: 9.5062

>NTDB_id=864595 Q7616_RS00280 WP_112103685.1 57202..57885(-) (comP) [Haemophilus influenzae strain 2016N21-284]
MTIQKGIITLTILIFISGLLTVILLLDDSHLSFFRAQQNQRKHYVERTLQLQKMTATKKQTACIDLPLNNNESVKQISIA
LEGAADAIQYFLWCERMSLFKKLPKKGDNQGALKDFVSGEKLAYFRPHFSSPPKILNANKMPKLYWFSDSQAEVEINGTV
SAVLIAEGDLKLTGKGRISGAVITSGNLTLDGVTLAYGKKTVVALVQQYSQWQLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=864595 Q7616_RS00280 WP_112103685.1 57202..57885(-) (comP) [Haemophilus influenzae strain 2016N21-284]
ATGACAATACAAAAAGGCATTATCACGCTGACTATTCTGATTTTTATTTCAGGTTTATTAACCGTAATCTTATTGTTGGA
TGACAGCCATTTAAGTTTTTTTCGTGCGCAACAAAATCAACGAAAACACTATGTGGAAAGAACATTACAACTGCAAAAAA
TGACCGCGACGAAAAAACAAACTGCCTGTATTGATTTACCCTTAAATAATAATGAAAGTGTGAAGCAAATCAGCATCGCC
CTTGAGGGTGCCGCCGATGCAATTCAATATTTTCTTTGGTGTGAAAGAATGAGCCTATTTAAAAAATTGCCTAAAAAGGG
AGATAATCAAGGTGCATTGAAAGATTTTGTGAGTGGCGAAAAACTTGCCTATTTTCGACCGCACTTTTCTTCCCCGCCCA
AAATTTTAAACGCGAATAAAATGCCTAAACTGTATTGGTTTTCAGATTCACAAGCAGAAGTTGAAATTAATGGCACCGTA
TCTGCCGTATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGGATTAGTGGTGCAGTGATTACCAGTGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTGGTTGCTTTAGTGCAACAATATAGTCAGTGGCAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

96.035

100

0.96