Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   Q7617_RS04005 Genome accession   NZ_CP131716
Coordinates   785816..786508 (+) Length   230 a.a.
NCBI ID   WP_075985521.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016C10-304     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 780816..791508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7617_RS03985 (Q7617_03985) ampD 782087..782647 (-) 561 WP_075985522.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  Q7617_RS03990 (Q7617_03990) pilA 782762..783211 (+) 450 WP_005666683.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  Q7617_RS03995 (Q7617_03995) pilB 783208..784602 (+) 1395 WP_005666685.1 GspE/PulE family protein Machinery gene
  Q7617_RS04000 (Q7617_04000) pilC 784599..785819 (+) 1221 WP_005666687.1 type II secretion system F family protein Machinery gene
  Q7617_RS04005 (Q7617_04005) pilD 785816..786508 (+) 693 WP_075985521.1 A24 family peptidase Machinery gene
  Q7617_RS04010 (Q7617_04010) rho 786563..787825 (-) 1263 WP_005666690.1 transcription termination factor Rho -
  Q7617_RS04015 (Q7617_04015) metJ 788073..788390 (+) 318 WP_005631186.1 met regulon transcriptional regulator MetJ -
  Q7617_RS04020 (Q7617_04020) cueR 788404..788790 (-) 387 WP_038439225.1 Cu(I)-responsive transcriptional regulator -
  Q7617_RS04025 (Q7617_04025) - 788867..789073 (+) 207 WP_005666693.1 heavy-metal-associated domain-containing protein -
  Q7617_RS04030 (Q7617_04030) - 789159..789365 (+) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  Q7617_RS04035 (Q7617_04035) - 789340..791508 (+) 2169 WP_136429391.1 heavy metal translocating P-type ATPase -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26837.84 Da        Isoelectric Point: 8.5626

>NTDB_id=864583 Q7617_RS04005 WP_075985521.1 785816..786508(+) (pilD) [Haemophilus influenzae strain 2016C10-304]
MIYFAMFLLGDIFGIALWFYLSGFITRLQQEIYATYIELFPQNFLSFQPSVSSIQQKKCGHILRYFLSVGVGFIFLQIAF
KDSIFTVWFGLTLLILWAISYLDWHYQLISTTLCLWLLTIGLFGADNNFSLLTLSESIKSAASFFIVFYAIYWIAKFYYG
KEAFGRGDYWLAMALGSFIHLETLPHFLLLASVLGICFSLIHKKKKEFIPFAPFMNLSAVIIYFVKYYWY

Nucleotide


Download         Length: 693 bp        

>NTDB_id=864583 Q7617_RS04005 WP_075985521.1 785816..786508(+) (pilD) [Haemophilus influenzae strain 2016C10-304]
ATGATTTACTTCGCAATGTTTTTATTAGGCGACATCTTCGGGATCGCATTGTGGTTCTACCTATCTGGTTTTATTACCCG
TTTACAGCAAGAGATTTATGCGACTTATATTGAATTATTCCCACAAAACTTTCTGTCATTTCAGCCTAGCGTTTCCTCTA
TTCAACAAAAAAAGTGCGGTCATATTTTGAGGTATTTTTTAAGTGTTGGGGTAGGATTTATATTTTTACAAATTGCCTTC
AAAGATTCTATTTTTACTGTATGGTTCGGACTCACACTTCTTATCCTTTGGGCAATCAGTTATCTTGATTGGCACTATCA
ACTTATTTCTACTACACTCTGTTTATGGCTACTTACAATCGGTTTATTTGGGGCAGACAATAATTTTTCATTGCTTACGT
TATCTGAAAGCATAAAAAGTGCGGCAAGTTTTTTTATTGTTTTCTACGCAATCTATTGGATTGCAAAATTCTATTACGGA
AAAGAAGCCTTTGGGCGGGGAGATTATTGGCTAGCAATGGCATTAGGAAGTTTTATTCATTTAGAAACCTTACCGCACTT
TTTGTTATTAGCTTCAGTTCTTGGAATATGTTTTTCGCTTATTCATAAAAAGAAAAAAGAATTTATACCTTTTGCCCCTT
TTATGAACTTATCAGCAGTCATCATTTATTTCGTCAAATATTACTGGTATTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(92-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

90

100

0.9
  pilD Haemophilus influenzae Rd KW20

89.565

100

0.896