Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   Q7617_RS00275 Genome accession   NZ_CP131716
Coordinates   57221..57733 (-) Length   170 a.a.
NCBI ID   WP_136429058.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016C10-304     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52221..62733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7617_RS00260 (Q7617_00260) comQ 55542..55829 (-) 288 WP_054249354.1 DUF5374 domain-containing protein Machinery gene
  Q7617_RS00265 (Q7617_00265) comP 55822..56505 (-) 684 WP_136429062.1 DUF2572 family protein Machinery gene
  Q7617_RS00270 (Q7617_00270) comO 56502..57221 (-) 720 WP_136429060.1 type II secretion system protein J Machinery gene
  Q7617_RS00275 (Q7617_00275) comN 57221..57733 (-) 513 WP_136429058.1 type II secretion system protein Machinery gene
  Q7617_RS00280 (Q7617_00280) suhB 57933..58736 (+) 804 WP_005631453.1 inositol-1-monophosphatase -
  Q7617_RS00285 (Q7617_00285) nrfE 58844..60751 (+) 1908 WP_136429056.1 heme lyase NrfEFG subunit NrfE -
  Q7617_RS00290 (Q7617_00290) - 60751..61281 (+) 531 WP_116966654.1 DsbE family thiol:disulfide interchange protein -
  Q7617_RS00295 (Q7617_00295) nrfF 61278..62420 (+) 1143 WP_136429054.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19929.31 Da        Isoelectric Point: 9.2038

>NTDB_id=864560 Q7617_RS00275 WP_136429058.1 57221..57733(-) (comN) [Haemophilus influenzae strain 2016C10-304]
MQKGMTLVELLIGLAIISIVLSFVVPLWQTDLPKTILAKEQHRLYLFLRQIQARAENSSKVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHYIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=864560 Q7617_RS00275 WP_136429058.1 57221..57733(-) (comN) [Haemophilus influenzae strain 2016C10-304]
ATGCAGAAAGGTATGACATTAGTGGAATTATTAATTGGGTTAGCCATTATCAGCATTGTGCTGAGTTTTGTCGTGCCATT
ATGGCAAACCGATTTACCTAAAACGATTTTAGCTAAAGAGCAACATCGCCTGTATTTATTTCTACGACAAATTCAGGCTC
GTGCAGAAAATTCATCGAAAGTGTGGTTTTTACTTATCAATCGGAACCTTGCGACACAACAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCACATTTTTACTATCCTTA
TTTTCCTAATAAAACGATGATTCAAAGCCATTATATTTATCCGAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGTTTTATTTTGCAAGCAGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGTAGTATTCGTTTA
AAAACCAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

95.294

100

0.953