Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   Q7617_RS00265 Genome accession   NZ_CP131716
Coordinates   55822..56505 (-) Length   227 a.a.
NCBI ID   WP_136429062.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016C10-304     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 50822..61505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7617_RS00250 (Q7617_00250) nrdR 51612..52061 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  Q7617_RS00255 (Q7617_00255) recC 52116..55496 (-) 3381 WP_136429064.1 exodeoxyribonuclease V subunit gamma -
  Q7617_RS00260 (Q7617_00260) comQ 55542..55829 (-) 288 WP_054249354.1 DUF5374 domain-containing protein Machinery gene
  Q7617_RS00265 (Q7617_00265) comP 55822..56505 (-) 684 WP_136429062.1 DUF2572 family protein Machinery gene
  Q7617_RS00270 (Q7617_00270) comO 56502..57221 (-) 720 WP_136429060.1 type II secretion system protein J Machinery gene
  Q7617_RS00275 (Q7617_00275) comN 57221..57733 (-) 513 WP_136429058.1 type II secretion system protein Machinery gene
  Q7617_RS00280 (Q7617_00280) suhB 57933..58736 (+) 804 WP_005631453.1 inositol-1-monophosphatase -
  Q7617_RS00285 (Q7617_00285) nrfE 58844..60751 (+) 1908 WP_136429056.1 heme lyase NrfEFG subunit NrfE -
  Q7617_RS00290 (Q7617_00290) - 60751..61281 (+) 531 WP_116966654.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25576.26 Da        Isoelectric Point: 7.2435

>NTDB_id=864558 Q7617_RS00265 WP_136429062.1 55822..56505(-) (comP) [Haemophilus influenzae strain 2016C10-304]
MTIQKGIITLTILIFISGLLTAILLLDDSHLSFFREQQNQRKLYVERTLQLQKMTEEKKQTACLDLSLNNDESVKQISIT
LDGATDSIQYFLWCERMSPFKKSPKKGDNQGALKDFIHTEKLTDFRPHFSSPPRILNANKTPKLYWFSDSQAEVEINGTV
SAVLIAEGDLKLTGKGRISGAVITNGNLTLDGVTLAYGKKTVVALVQQYSQWQLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=864558 Q7617_RS00265 WP_136429062.1 55822..56505(-) (comP) [Haemophilus influenzae strain 2016C10-304]
ATGACAATACAAAAAGGTATTATCACGCTGACTATTTTGATTTTTATTTCGGGTTTATTAACCGCAATCTTATTGTTAGA
TGATAGCCATTTAAGTTTTTTTCGTGAGCAACAAAATCAACGAAAACTGTATGTGGAAAGAACATTACAACTGCAAAAAA
TGACAGAGGAGAAAAAACAAACTGCCTGCCTTGATTTATCATTAAATAATGATGAAAGTGTAAAGCAAATCAGCATTACG
CTTGATGGTGCCACAGATTCAATTCAATATTTTCTTTGGTGTGAAAGAATGAGCCCATTTAAAAAATCGCCTAAAAAGGG
AGATAATCAAGGTGCATTGAAAGATTTCATTCACACAGAAAAACTTACAGATTTTCGACCGCACTTTTCTTCCCCACCCA
GAATTTTAAACGCGAATAAAACACCTAAACTTTATTGGTTTTCAGATTCACAAGCGGAAGTTGAAATTAATGGCACAGTG
TCTGCCGTATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGGATTAGTGGCGCAGTGATTACCAACGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTGGTTGCTTTAGTGCAACAATATAGTCAGTGGCAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

91.63

100

0.916