Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   Q7617_RS00260 Genome accession   NZ_CP131716
Coordinates   55542..55829 (-) Length   95 a.a.
NCBI ID   WP_054249354.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016C10-304     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 50542..60829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7617_RS00250 (Q7617_00250) nrdR 51612..52061 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  Q7617_RS00255 (Q7617_00255) recC 52116..55496 (-) 3381 WP_136429064.1 exodeoxyribonuclease V subunit gamma -
  Q7617_RS00260 (Q7617_00260) comQ 55542..55829 (-) 288 WP_054249354.1 DUF5374 domain-containing protein Machinery gene
  Q7617_RS00265 (Q7617_00265) comP 55822..56505 (-) 684 WP_136429062.1 DUF2572 family protein Machinery gene
  Q7617_RS00270 (Q7617_00270) comO 56502..57221 (-) 720 WP_136429060.1 type II secretion system protein J Machinery gene
  Q7617_RS00275 (Q7617_00275) comN 57221..57733 (-) 513 WP_136429058.1 type II secretion system protein Machinery gene
  Q7617_RS00280 (Q7617_00280) suhB 57933..58736 (+) 804 WP_005631453.1 inositol-1-monophosphatase -
  Q7617_RS00285 (Q7617_00285) nrfE 58844..60751 (+) 1908 WP_136429056.1 heme lyase NrfEFG subunit NrfE -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 11031.81 Da        Isoelectric Point: 9.2201

>NTDB_id=864557 Q7617_RS00260 WP_054249354.1 55542..55829(-) (comQ) [Haemophilus influenzae strain 2016C10-304]
MNKGMSLITLLFSLALFSVLFLVFNQWTADQRKSAVKTYQDFQATQIAENQAQRQFLGLACEQLIQQNGLTFRIRCENER
IIVRYPTSEILIKTQ

Nucleotide


Download         Length: 288 bp        

>NTDB_id=864557 Q7617_RS00260 WP_054249354.1 55542..55829(-) (comQ) [Haemophilus influenzae strain 2016C10-304]
ATGAATAAAGGAATGTCGCTTATTACATTGTTATTTTCTTTAGCTTTATTTAGCGTTTTATTTCTTGTTTTTAATCAATG
GACGGCAGATCAGCGAAAAAGTGCGGTAAAAACTTATCAAGATTTTCAGGCAACACAAATTGCAGAGAATCAAGCTCAAC
GCCAATTTTTAGGGTTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTATTCGATGTGAAAATGAACGC
ATTATTGTGCGTTATCCTACGAGTGAAATTTTGATAAAAACTCAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

93.684

100

0.937