Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   Q7620_RS10045 Genome accession   NZ_CP131713
Coordinates   1936589..1937542 (-) Length   317 a.a.
NCBI ID   WP_000345126.1    Uniprot ID   A0A0F7YBB9
Organism   Streptococcus pneumoniae strain 2008C09-276     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1931589..1942542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7620_RS10015 (Q7620_09985) - 1932350..1932973 (-) 624 WP_000932658.1 hypothetical protein -
  Q7620_RS10020 (Q7620_09990) jag 1933024..1934010 (-) 987 WP_000260018.1 RNA-binding cell elongation regulator Jag/EloR -
  Q7620_RS10025 (Q7620_09995) - 1934029..1934853 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  Q7620_RS10030 (Q7620_10000) rnpA 1934828..1935199 (-) 372 WP_000739246.1 ribonuclease P protein component -
  Q7620_RS10035 (Q7620_10005) - 1935216..1935347 (-) 132 WP_000768904.1 hypothetical protein -
  Q7620_RS10040 (Q7620_10010) - 1935348..1936538 (-) 1191 WP_000167765.1 acetate kinase -
  Q7620_RS10045 (Q7620_10015) comYH 1936589..1937542 (-) 954 WP_000345126.1 class I SAM-dependent methyltransferase Machinery gene
  Q7620_RS10050 (Q7620_10020) - 1937603..1938195 (-) 593 Protein_1954 methyltransferase domain-containing protein -
  Q7620_RS10055 (Q7620_10025) comGG/cglG 1938298..1938744 (-) 447 WP_001809944.1 competence type IV pilus minor pilin ComGG Machinery gene
  Q7620_RS10060 (Q7620_10030) comGF/cglF 1938722..1939183 (-) 462 WP_000250531.1 competence type IV pilus minor pilin ComGF Machinery gene
  Q7620_RS10065 (Q7620_10035) comGE/cglE 1939146..1939448 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  Q7620_RS10070 (Q7620_10040) comGD/cglD 1939411..1939845 (-) 435 WP_033606693.1 competence type IV pilus minor pilin ComGD Machinery gene
  Q7620_RS10075 (Q7620_10045) comGC/cglC 1939808..1940131 (-) 324 WP_000738628.1 comG operon protein ComGC Machinery gene
  Q7620_RS10080 (Q7620_10050) comGB/cglB 1940133..1941149 (-) 1017 WP_078130737.1 competence type IV pilus assembly protein ComGB Machinery gene
  Q7620_RS10085 (Q7620_10055) comGA/cglA/cilD 1941097..1942038 (-) 942 WP_000249536.1 competence type IV pilus ATPase ComGA Machinery gene
  Q7620_RS10090 (Q7620_10060) - 1942114..1942479 (-) 366 WP_054407367.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35714.87 Da        Isoelectric Point: 4.2434

>NTDB_id=864376 Q7620_RS10045 WP_000345126.1 1936589..1937542(-) (comYH) [Streptococcus pneumoniae strain 2008C09-276]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKEWLKEEASLVAMISLPENLFANAKQSKTIFILQKKNEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=864376 Q7620_RS10045 WP_000345126.1 1936589..1937542(-) (comYH) [Streptococcus pneumoniae strain 2008C09-276]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTGCTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTACTTGGGAATGGAAGTGGATGATTTACTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGCTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTAAAAGAATGGCTGAAAGAAGAGGCGAGTCTGGTTGCTATGATTAGTCTGCCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAATGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F7YBB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.633

98.738

0.539
  comYH Streptococcus mutans UA159

54.313

98.738

0.536