Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   Q7621_RS01700 Genome accession   NZ_CP131712
Coordinates   328384..329073 (+) Length   229 a.a.
NCBI ID   WP_341966644.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 2008C09-280     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 323384..334073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7621_RS01675 (Q7621_01680) gpsB 323481..323822 (+) 342 WP_000200645.1 cell division regulator GpsB -
  Q7621_RS01685 (Q7621_01690) - 324308..325465 (+) 1158 WP_000711414.1 class I SAM-dependent RNA methyltransferase -
  Q7621_RS01690 (Q7621_01695) mapZ 325478..326872 (+) 1395 WP_000039255.1 mid-cell-anchored protein MapZ -
  Q7621_RS01695 (Q7621_01700) gndA 326948..328372 (+) 1425 WP_000158793.1 NADP-dependent phosphogluconate dehydrogenase -
  Q7621_RS01700 (Q7621_01705) covR 328384..329073 (+) 690 WP_341966644.1 response regulator transcription factor Regulator
  Q7621_RS01705 (Q7621_01710) cbpJ 329172..330170 (+) 999 WP_000771053.1 choline-binding protein CbpJ -
  Q7621_RS01710 (Q7621_01715) - 330288..331519 (-) 1232 Protein_333 MFS transporter -
  Q7621_RS01715 (Q7621_01720) - 331678..332148 (-) 471 WP_001809487.1 lanthionine synthetase LanC family protein -
  Q7621_RS01720 (Q7621_01725) - 332048..332406 (-) 359 Protein_335 lanthionine synthetase LanC family protein -
  Q7621_RS01725 (Q7621_01730) - 333069..333398 (+) 330 WP_000619581.1 transposase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26960.29 Da        Isoelectric Point: 6.9730

>NTDB_id=864249 Q7621_RS01700 WP_341966644.1 328384..329073(+) (covR) [Streptococcus pneumoniae strain 2008C09-280]
MGKRILLLEKERNLAHFLSLELQKEQYRVDLVEEGQKALSMALQTDYDLILLNVNLGDMMAQDFAEKLSRTKPASVIMIL
DHWEDLQEELEVVQRFAVSYIYKPVFIENLVARISAIFRGRDFIDQHCSLMKVPRTYRNLRIDVEHHTVYRGEEMIALTR
REYDLLATLMGSKKVLTREQLLESVWKYESATETNIVDVYIRYLRSKLDVKCQKSYIKTVRGVGYTMQE

Nucleotide


Download         Length: 690 bp        

>NTDB_id=864249 Q7621_RS01700 WP_341966644.1 328384..329073(+) (covR) [Streptococcus pneumoniae strain 2008C09-280]
ATGGGGAAACGGATTTTATTACTTGAGAAAGAACGAAATCTAGCTCATTTTTTAAGTTTGGAACTCCAGAAAGAGCAGTA
TCGGGTTGATCTGGTAGAGGAGGGGCAAAAAGCCCTTTCCATGGCTCTTCAGACAGACTATGATTTGATTTTATTGAACG
TTAATCTGGGAGATATGATGGCTCAGGATTTTGCAGAAAAATTGAGTCGAACTAAACCTGCCTCAGTCATCATGATTTTA
GATCATTGGGAAGACTTGCAAGAAGAGCTGGAAGTTGTTCAGCGTTTTGCAGTTTCATACATCTATAAGCCAGTCTTTAT
CGAAAATCTGGTAGCGCGTATTTCGGCAATCTTCCGAGGTCGGGACTTCATTGATCAACACTGCAGTCTGATGAAAGTTC
CAAGGACCTACCGCAATCTTAGGATAGATGTTGAACATCACACGGTTTATCGTGGTGAAGAGATGATTGCTCTGACCCGC
CGTGAGTATGACCTTTTGGCGACACTTATGGGAAGCAAGAAAGTATTGACTCGTGAGCAATTGTTGGAAAGTGTTTGGAA
GTATGAAAGTGCGACCGAGACAAATATCGTAGATGTCTATATCCGCTATCTACGGAGCAAGCTTGATGTTAAATGCCAAA
AAAGCTACATTAAAACCGTGCGTGGTGTTGGTTACACCATGCAAGAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.826

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

46.087

100

0.463