Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   WHL49_RS08140 Genome accession   NZ_CP148103
Coordinates   1552658..1553683 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS361     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1547658..1558683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL49_RS08105 ylbE 1547958..1548197 (+) 240 WP_003232231.1 YlbE-like family protein -
  WHL49_RS08110 ylbF 1548313..1548762 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  WHL49_RS08115 ylbG 1548817..1549089 (+) 273 WP_009967171.1 YlbG family protein -
  WHL49_RS08120 rsmD 1549412..1549966 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  WHL49_RS08125 coaD 1549971..1550456 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  WHL49_RS08130 spoVV 1550467..1551693 (-) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  WHL49_RS08135 ylbK 1551874..1552656 (+) 783 WP_003232221.1 patatin family protein -
  WHL49_RS08140 sepM 1552658..1553683 (+) 1026 WP_003245451.1 protease DdcP Regulator
  WHL49_RS08145 ylbM 1553700..1554947 (-) 1248 WP_003244707.1 nucleotidyltransferase -
  WHL49_RS08150 - 1554944..1555129 (-) 186 WP_003232215.1 hypothetical protein -
  WHL49_RS08155 ylbN 1555157..1555675 (+) 519 WP_003232214.1 DUF177 domain-containing protein -
  WHL49_RS08160 rpmF 1555697..1555876 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  WHL49_RS08165 gerR 1556022..1556603 (+) 582 WP_003232210.1 sporulation specific transcriptional regulator GerR -
  WHL49_RS08170 ylbP 1556660..1557142 (-) 483 WP_003244940.1 N-acetyltransferase -
  WHL49_RS08175 - 1557302..1558198 (+) 897 WP_003232206.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=864047 WHL49_RS08140 WP_003245451.1 1552658..1553683(+) (sepM) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=864047 WHL49_RS08140 WP_003245451.1 1552658..1553683(+) (sepM) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGTC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCATTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAATCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACGATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402