Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   WHL49_RS08110 Genome accession   NZ_CP148103
Coordinates   1548313..1548762 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS361     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1543313..1553762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL49_RS08070 ctaE 1543330..1543953 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  WHL49_RS08075 ctaF 1543956..1544288 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  WHL49_RS08080 ctaG 1544315..1545208 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  WHL49_RS08085 ylbA 1545240..1545602 (-) 363 WP_003232238.1 YugN family protein -
  WHL49_RS08090 ylbB 1545742..1546188 (+) 447 WP_003221362.1 CBS domain-containing protein -
  WHL49_RS08095 ylbC 1546272..1547312 (+) 1041 WP_003245434.1 CAP domain-containing protein -
  WHL49_RS08100 ylbD 1547544..1547942 (+) 399 WP_003232233.1 YlbD family protein -
  WHL49_RS08105 ylbE 1547958..1548197 (+) 240 WP_003232231.1 YlbE-like family protein -
  WHL49_RS08110 ylbF 1548313..1548762 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  WHL49_RS08115 ylbG 1548817..1549089 (+) 273 WP_009967171.1 YlbG family protein -
  WHL49_RS08120 rsmD 1549412..1549966 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  WHL49_RS08125 coaD 1549971..1550456 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  WHL49_RS08130 spoVV 1550467..1551693 (-) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  WHL49_RS08135 ylbK 1551874..1552656 (+) 783 WP_003232221.1 patatin family protein -
  WHL49_RS08140 sepM 1552658..1553683 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=864046 WHL49_RS08110 WP_003221370.1 1548313..1548762(+) (ylbF) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=864046 WHL49_RS08110 WP_003221370.1 1548313..1548762(+) (ylbF) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1