Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   WHL49_RS06195 Genome accession   NZ_CP148103
Coordinates   1202415..1203332 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS361     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1197415..1208332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL49_RS06180 trpS 1197995..1198987 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  WHL49_RS06185 oppA 1199731..1201368 (+) 1638 WP_003232957.1 oligopeptide ABC transporter substrate-binding protein OppA -
  WHL49_RS06190 oppB 1201476..1202411 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  WHL49_RS06195 amiD 1202415..1203332 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  WHL49_RS06200 oppD 1203337..1204413 (+) 1077 WP_014906294.1 oligopeptide ABC transporter ATP-binding protein OppD -
  WHL49_RS06205 oppF 1204415..1205332 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  WHL49_RS06210 yjbB 1205439..1206656 (+) 1218 WP_010886478.1 MFS transporter -
  WHL49_RS06215 yjbC 1206820..1207398 (+) 579 WP_003244921.1 GNAT family N-acetyltransferase -
  WHL49_RS06220 spx 1207579..1207974 (+) 396 WP_003245483.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=864030 WHL49_RS06195 WP_003232954.1 1202415..1203332(+) (amiD) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=864030 WHL49_RS06195 WP_003232954.1 1202415..1203332(+) (amiD) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACAGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTATTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364