Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   Q7625_RS09350 Genome accession   NZ_CP131708
Coordinates   1837629..1838450 (-) Length   273 a.a.
NCBI ID   WP_001826799.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 2016C10-332     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 1832629..1843450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7625_RS09305 (Q7625_09290) - 1833173..1833490 (-) 318 WP_000615767.1 thioredoxin family protein -
  Q7625_RS09310 (Q7625_09295) - 1833487..1833786 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  Q7625_RS09315 (Q7625_09300) - 1833984..1834064 (-) 81 WP_223200442.1 hypothetical protein -
  Q7625_RS09320 (Q7625_09305) - 1834071..1834262 (-) 192 WP_000291826.1 cell wall-binding protein -
  Q7625_RS09325 (Q7625_09310) - 1834423..1835097 (-) 675 WP_000725749.1 membrane protein -
  Q7625_RS09330 (Q7625_09315) - 1835103..1835549 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  Q7625_RS09335 (Q7625_09320) - 1835663..1836166 (-) 504 WP_000800947.1 phosphatase PAP2 family protein -
  Q7625_RS09340 (Q7625_09325) - 1836163..1836525 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  Q7625_RS09345 (Q7625_09330) - 1836591..1837622 (-) 1032 Protein_1829 ATP-binding cassette domain-containing protein -
  Q7625_RS09350 (Q7625_09335) rcrP 1837629..1838450 (-) 822 WP_001826799.1 ABC transporter permease Regulator
  Q7625_RS09355 (Q7625_09340) - 1838466..1838937 (-) 472 Protein_1831 MarR family winged helix-turn-helix transcriptional regulator -
  Q7625_RS09360 (Q7625_09345) - 1839061..1839777 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  Q7625_RS09365 (Q7625_09350) ply 1840660..1842075 (-) 1416 WP_001284359.1 cholesterol-dependent cytolysin pneumolysin -
  Q7625_RS09370 (Q7625_09355) - 1842086..1842496 (-) 411 WP_000595762.1 hypothetical protein -
  Q7625_RS09375 (Q7625_09360) - 1842489..1843097 (-) 609 WP_000083614.1 hypothetical protein -

Sequence


Protein


Download         Length: 273 a.a.        Molecular weight: 30572.17 Da        Isoelectric Point: 5.9257

>NTDB_id=863980 Q7625_RS09350 WP_001826799.1 1837629..1838450(-) (rcrP) [Streptococcus pneumoniae strain 2016C10-332]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQGTNLDELWQPASMMMGMLFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGSIMAIWAIGKILGHSEYWLWAVLVAVIVNVLMTTV
LMTLDFPKQSLIQGLIDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIVFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=863980 Q7625_RS09350 WP_001826799.1 1837629..1838450(-) (rcrP) [Streptococcus pneumoniae strain 2016C10-332]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGGAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGCTCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGACGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGCGTGGTTCAATTATGGCTATTTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTTTGGGCCGTACTTGTGGCAGTGATTGTCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGACTTTCCAAAACAGTCCTTGATTCAGGGGCTGATAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTGAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTA
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTGT
TTTCATGTCTTATGCCATGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

56.842

100

0.593