Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   Q7625_RS02285 Genome accession   NZ_CP131708
Coordinates   447704..448435 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 2016C10-332     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 442704..453435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7625_RS02260 (Q7625_02260) - 444277..444633 (+) 357 WP_000114427.1 hypothetical protein -
  Q7625_RS02265 (Q7625_02265) dnaJ 445035..446171 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  Q7625_RS02270 (Q7625_02270) - 446483..446767 (-) 285 WP_025169639.1 hypothetical protein -
  Q7625_RS02275 (Q7625_02275) - 446929..447216 (-) 288 WP_000777753.1 hypothetical protein -
  Q7625_RS02280 (Q7625_02280) - 447226..447636 (-) 411 WP_001278301.1 HIT family protein -
  Q7625_RS02285 (Q7625_02285) pptA 447704..448435 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  Q7625_RS02290 (Q7625_02290) - 448432..449481 (+) 1050 WP_000653774.1 ABC transporter permease -
  Q7625_RS02295 (Q7625_02295) - 449649..449978 (-) 330 WP_000132572.1 hypothetical protein -
  Q7625_RS02300 (Q7625_02300) - 450254..450592 (+) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  Q7625_RS02305 (Q7625_02305) comE/blpR 450597..451334 (+) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  Q7625_RS02310 (Q7625_02310) - 451348..452688 (+) 1341 WP_001017642.1 sensor histidine kinase -
  Q7625_RS02315 (Q7625_02315) blpC 452759..452887 (-) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=863945 Q7625_RS02285 WP_000889923.1 447704..448435(+) (pptA) [Streptococcus pneumoniae strain 2016C10-332]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=863945 Q7625_RS02285 WP_000889923.1 447704..448435(+) (pptA) [Streptococcus pneumoniae strain 2016C10-332]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTCCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708