Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   Q7635_RS02660 Genome accession   NZ_CP131670
Coordinates   561910..562479 (+) Length   189 a.a.
NCBI ID   WP_000872864.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2004N07-109     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 556910..567479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7635_RS02635 (Q7635_02635) cysE 558123..558770 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  Q7635_RS02640 (Q7635_02640) cysS 558754..560154 (+) 1401 WP_000631974.1 cysteine--tRNA ligase -
  Q7635_RS02645 (Q7635_02645) - 560147..560551 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  Q7635_RS02650 (Q7635_02650) rlmB 560559..561305 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  Q7635_RS02655 (Q7635_02655) - 561305..561829 (+) 525 WP_000664738.1 NYN domain-containing protein -
  Q7635_RS02660 (Q7635_02660) sigH 561910..562479 (+) 570 WP_000872864.1 RNA polymerase sigma factor Regulator
  Q7635_RS02665 (Q7635_02665) rpmG 562594..562737 (+) 144 Protein_509 50S ribosomal protein L33 -
  Q7635_RS02670 (Q7635_02670) secE 562793..562975 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  Q7635_RS02675 (Q7635_02675) nusG 562988..563536 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  Q7635_RS02680 (Q7635_02680) rplK 563717..564139 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  Q7635_RS02685 (Q7635_02685) rplA 564347..565039 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  Q7635_RS02690 (Q7635_02690) rplJ 565311..565811 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  Q7635_RS02695 (Q7635_02695) rplL 565854..566222 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  Q7635_RS02700 (Q7635_02700) - 566397..567005 (+) 609 WP_000020302.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=863599 Q7635_RS02660 WP_000872864.1 561910..562479(+) (sigH) [Staphylococcus aureus strain 2004N07-109]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLKPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNQLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=863599 Q7635_RS02660 WP_000872864.1 561910..562479(+) (sigH) [Staphylococcus aureus strain 2004N07-109]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTAAAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATCAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974