Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   Q7638_RS02540 Genome accession   NZ_CP131663
Coordinates   548866..549435 (+) Length   189 a.a.
NCBI ID   WP_000872872.1    Uniprot ID   A0AB73JJN0
Organism   Staphylococcus aureus strain 2010C06-103     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 543866..554435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7638_RS02515 (Q7638_02510) cysE 545079..545726 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  Q7638_RS02520 (Q7638_02515) cysS 545710..547110 (+) 1401 WP_217658541.1 cysteine--tRNA ligase -
  Q7638_RS02525 (Q7638_02520) - 547103..547507 (+) 405 WP_000370186.1 Mini-ribonuclease 3 -
  Q7638_RS02530 (Q7638_02525) rlmB 547515..548261 (+) 747 WP_000390339.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  Q7638_RS02535 (Q7638_02530) - 548261..548785 (+) 525 WP_000664738.1 NYN domain-containing protein -
  Q7638_RS02540 (Q7638_02535) sigH 548866..549435 (+) 570 WP_000872872.1 RNA polymerase sigma factor Regulator
  Q7638_RS02545 (Q7638_02540) rpmG 549550..549693 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  Q7638_RS02550 (Q7638_02545) secE 549749..549931 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  Q7638_RS02555 (Q7638_02550) nusG 549944..550492 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  Q7638_RS02560 (Q7638_02555) rplK 550673..551095 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  Q7638_RS02565 (Q7638_02560) rplA 551303..551995 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  Q7638_RS02570 (Q7638_02565) rplJ 552267..552767 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  Q7638_RS02575 (Q7638_02570) rplL 552810..553178 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  Q7638_RS02580 (Q7638_02575) - 553353..553961 (+) 609 WP_000020296.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23079.92 Da        Isoelectric Point: 9.6015

>NTDB_id=863465 Q7638_RS02540 WP_000872872.1 548866..549435(+) (sigH) [Staphylococcus aureus strain 2010C06-103]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRIDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=863465 Q7638_RS02540 WP_000872872.1 548866..549435(+) (sigH) [Staphylococcus aureus strain 2010C06-103]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAACAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATAGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAGCGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979