Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   WAE38_RS07295 Genome accession   NZ_CP147984
Coordinates   1447778..1449616 (+) Length   612 a.a.
NCBI ID   WP_338823320.1    Uniprot ID   -
Organism   Glaesserella parasuis strain H16SD2BY4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1442778..1454616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAE38_RS07265 (WAE38_07265) - 1443315..1443930 (-) 616 Protein_1415 IS1595 family transposase -
  WAE38_RS07270 (WAE38_07270) - 1443970..1444264 (+) 295 Protein_1416 hypothetical protein -
  WAE38_RS07275 (WAE38_07275) sodA 1444377..1444997 (-) 621 WP_021113693.1 superoxide dismutase [Mn] -
  WAE38_RS07280 (WAE38_07280) modC 1445216..1446277 (-) 1062 WP_035494862.1 molybdenum ABC transporter ATP-binding protein ModC -
  WAE38_RS07285 (WAE38_07285) modB 1446277..1446978 (-) 702 WP_075630432.1 molybdate ABC transporter permease subunit -
  WAE38_RS07290 (WAE38_07290) pgsA 1447134..1447682 (+) 549 WP_021112533.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WAE38_RS07295 (WAE38_07295) uvrC 1447778..1449616 (+) 1839 WP_338823320.1 excinuclease ABC subunit UvrC Machinery gene
  WAE38_RS07300 (WAE38_07300) htpX 1449654..1450505 (-) 852 WP_021113696.1 protease HtpX -
  WAE38_RS07305 (WAE38_07305) dinB 1450611..1451681 (-) 1071 WP_338823323.1 DNA polymerase IV -
  WAE38_RS07310 (WAE38_07310) - 1451825..1452733 (+) 909 WP_021109738.1 lysine exporter LysO family protein -
  WAE38_RS07315 (WAE38_07315) ampD 1452726..1453292 (-) 567 WP_005714146.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  WAE38_RS07320 (WAE38_07320) - 1453350..1454189 (+) 840 WP_021109740.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 69554.65 Da        Isoelectric Point: 8.7716

>NTDB_id=863462 WAE38_RS07295 WP_338823320.1 1447778..1449616(+) (uvrC) [Glaesserella parasuis strain H16SD2BY4]
MSKFNSKQFLADTPHNPGVYRMYDDKGTIIYVGKAKDLKKRLSSYFRSTLASRKTEALVSQIAHIDTTITHSETEALLLE
HNYIKENQPKYNVLLRDDKSYPYILLTKHQHPRLASFRGSKKIAGEYFGPYPNAGAVRETLNLLQKLFPIRQCEDNYYKN
RSRPCLQYQIGRCLAPCVEGIYSQREYDQQVEYVRLFLQGKDQQVIEHLISKMETAAEDLDFEAAARFRDQIQQVRAITE
KQFVSNERLDDLDIISIAYQHGIACVHILFVRQGKVLGSRSYFPKVPNHTELAELSDTFIGQFYLQMNQHRTIPHQIIID
HPVSEVEALEKVLSEQTGHKVSITDKVRGEKSRYLALAKTNAMAALTLQLKQDARIQTRYEALQAVLSLPKIARMECFDI
SHTMGEQTVASCVVFDENGPLKSDYRRFNIEGITGGDDYAAMEQALLKRYDKPLPPEKIPDIIFIDGGKGQLNRALETFA
NLKVEWDKSKPLLIGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQHIRDESHNHAISGHRKKRQKAFTESGLEA
IAGVGAKRRHLLLKYLGGMQGVKSATFDEIKSVPGISVSLAEIIFDTLNYSE

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=863462 WAE38_RS07295 WP_338823320.1 1447778..1449616(+) (uvrC) [Glaesserella parasuis strain H16SD2BY4]
ATGTCAAAATTCAATTCCAAACAATTTCTTGCCGATACGCCACATAACCCTGGTGTTTATCGTATGTATGACGATAAAGG
CACGATCATTTATGTCGGCAAAGCAAAAGATTTAAAAAAGCGTCTATCGAGCTATTTTCGTAGCACTCTTGCCAGCCGAA
AAACTGAAGCCTTAGTATCGCAAATTGCTCATATTGATACCACCATTACCCATTCGGAAACCGAAGCCTTACTGTTGGAA
CACAATTACATTAAGGAAAATCAACCGAAATACAATGTGTTGCTTCGTGACGACAAATCTTACCCTTATATTTTGCTTAC
CAAACACCAGCACCCACGTTTAGCCAGCTTTCGGGGAAGTAAAAAAATCGCAGGGGAATATTTTGGACCTTACCCAAATG
CAGGGGCGGTGCGGGAAACCTTAAATCTGCTACAAAAACTGTTTCCGATCCGCCAGTGTGAAGACAACTACTACAAAAAC
CGTTCTCGCCCTTGTTTACAATATCAAATCGGGCGTTGCCTTGCCCCTTGCGTGGAAGGCATTTATTCCCAACGAGAATA
CGATCAACAGGTGGAGTATGTTCGCTTATTCTTACAAGGTAAAGATCAGCAAGTGATCGAACATTTGATTAGCAAAATGG
AAACAGCAGCGGAAGATCTGGATTTTGAAGCTGCCGCGCGTTTTCGAGATCAAATTCAGCAGGTGCGAGCGATCACTGAA
AAGCAATTTGTATCGAACGAACGCTTGGACGATCTCGATATTATTTCGATTGCCTATCAACACGGTATTGCTTGCGTGCA
TATTCTGTTTGTACGACAAGGGAAAGTGTTGGGTAGCCGAAGTTATTTCCCAAAAGTACCGAACCATACGGAACTTGCTG
AATTGAGCGACACTTTTATCGGGCAGTTTTATTTGCAGATGAACCAACATCGCACCATTCCGCACCAAATCATTATCGAT
CACCCCGTGAGCGAAGTGGAAGCCTTAGAAAAGGTATTGTCGGAACAAACAGGACATAAAGTGAGTATTACCGATAAGGT
GCGAGGCGAAAAAAGCCGTTATCTTGCTCTTGCTAAAACCAACGCAATGGCAGCACTGACTTTGCAACTCAAGCAAGATG
CTCGTATCCAAACCCGTTATGAAGCCTTACAAGCGGTGCTTTCTTTGCCAAAAATTGCAAGAATGGAATGTTTCGACATC
AGTCATACGATGGGCGAACAAACAGTCGCTTCTTGTGTGGTATTTGATGAAAATGGACCGTTAAAATCCGATTATCGCCG
TTTCAATATTGAAGGCATTACGGGGGGCGATGATTATGCTGCAATGGAACAAGCCCTGCTCAAACGTTACGATAAACCGC
TTCCGCCTGAAAAAATCCCCGATATTATCTTTATTGACGGCGGAAAAGGGCAGTTAAACCGAGCCTTAGAAACCTTTGCC
AATCTCAAAGTGGAATGGGATAAATCCAAACCATTACTTATCGGCGTAGCAAAAGGCGTAGAACGCAAGGCAGGGTTAGA
AACCTTGCTGATCAGCAAATGGGACAAGGAAATCCACTTACCGCCCGACAGCCCAGCGTTACATTTAATTCAGCATATCC
GTGATGAATCCCATAACCACGCCATTAGCGGACACCGTAAAAAACGGCAAAAAGCCTTTACCGAAAGCGGTTTAGAGGCA
ATCGCTGGCGTTGGAGCCAAACGCCGCCATTTGTTGCTAAAATATCTCGGTGGTATGCAAGGCGTCAAATCAGCAACATT
TGATGAAATTAAATCGGTTCCTGGAATTTCAGTATCTTTGGCTGAGATTATTTTCGACACCCTAAATTATAGTGAATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(204-237)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-542)

GIY-YIG catalytic domain (GIY-YIG)

(17-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

37.459

99.02

0.371
  uvrC Streptococcus pneumoniae R6

37.129

99.02

0.368
  uvrC Streptococcus pneumoniae D39

37.129

99.02

0.368