Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   WAE38_RS03860 Genome accession   NZ_CP147984
Coordinates   710449..711078 (-) Length   209 a.a.
NCBI ID   WP_005712712.1    Uniprot ID   -
Organism   Glaesserella parasuis strain H16SD2BY4     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 705449..716078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAE38_RS03845 (WAE38_03845) ligA 706144..708171 (+) 2028 WP_160404627.1 NAD-dependent DNA ligase LigA -
  WAE38_RS03850 (WAE38_03850) recQ 708229..710058 (-) 1830 WP_035495798.1 ATP-dependent DNA helicase RecQ Machinery gene
  WAE38_RS03855 (WAE38_03855) cyaY 710058..710366 (-) 309 WP_010785933.1 iron donor protein CyaY -
  WAE38_RS03860 (WAE38_03860) dinR/lexA 710449..711078 (-) 630 WP_005712712.1 transcriptional repressor LexA Regulator
  WAE38_RS03865 (WAE38_03865) - 711319..711765 (+) 447 WP_010785932.1 DoxX family protein -
  WAE38_RS03870 (WAE38_03870) - 711786..712088 (+) 303 WP_010785931.1 hypothetical protein -
  WAE38_RS03875 (WAE38_03875) - 712157..713053 (+) 897 WP_202113814.1 DUF692 family protein -
  WAE38_RS03880 (WAE38_03880) - 713062..713796 (+) 735 WP_078208283.1 putative DNA-binding domain-containing protein -
  WAE38_RS03885 (WAE38_03885) - 713800..714375 (+) 576 WP_338824731.1 sigma-70 family RNA polymerase sigma factor -
  WAE38_RS03890 (WAE38_03890) - 714377..714592 (+) 216 WP_005712699.1 hypothetical protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23240.65 Da        Isoelectric Point: 5.6315

>NTDB_id=863450 WAE38_RS03860 WP_005712712.1 710449..711078(-) (dinR/lexA) [Glaesserella parasuis strain H16SD2BY4]
MKRQHLTARQQEIFEFVKNHIESTGMPPTRVEIAREIGFKSPNAAEEHLKALARKGYIEMLSGTSRGIRILVEDEAANDE
EGLPLIGKVAAGTPIEAIEHIEKHYPVNGAMFSPAADYLLKVNGNSMEKIGILDGDLLAVHKTKSVRNGQVVVARVDDEV
TVKRLEKKGDLIYLHPENDELEPIIIDPRQSYIEIEGIAVGVIRSNAWM

Nucleotide


Download         Length: 630 bp        

>NTDB_id=863450 WAE38_RS03860 WP_005712712.1 710449..711078(-) (dinR/lexA) [Glaesserella parasuis strain H16SD2BY4]
ATGAAACGTCAGCACCTAACGGCTCGTCAGCAAGAAATCTTTGAATTTGTAAAAAATCATATTGAAAGTACGGGGATGCC
GCCAACTCGTGTAGAAATTGCACGCGAAATAGGGTTTAAATCGCCAAATGCCGCAGAAGAACATCTTAAAGCTCTTGCTC
GTAAAGGCTATATTGAAATGCTTTCAGGAACTTCGCGTGGGATCCGTATTTTAGTGGAAGATGAAGCCGCAAATGATGAA
GAGGGTTTGCCTTTAATTGGTAAAGTTGCAGCAGGTACGCCGATTGAGGCGATTGAACATATTGAAAAACATTATCCTGT
GAATGGAGCAATGTTTTCACCAGCCGCTGATTACCTTCTTAAGGTGAATGGAAACTCAATGGAGAAAATTGGCATCTTAG
ATGGTGATTTACTCGCAGTGCATAAAACCAAATCTGTTCGTAATGGGCAAGTGGTTGTCGCTCGTGTTGATGATGAAGTG
ACCGTCAAACGCTTAGAGAAAAAAGGTGACTTAATCTATTTACACCCAGAAAATGATGAATTAGAGCCGATTATCATCGA
TCCTCGTCAATCTTATATTGAAATCGAAGGCATTGCTGTCGGCGTTATTCGTAGCAACGCTTGGATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-67)

Peptidase S24-like (Peptidase_S24)

(84-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.725

97.608

0.378