Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   WAE38_RS03850 Genome accession   NZ_CP147984
Coordinates   708229..710058 (-) Length   609 a.a.
NCBI ID   WP_035495798.1    Uniprot ID   -
Organism   Glaesserella parasuis strain H16SD2BY4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 703229..715058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAE38_RS03820 (WAE38_03820) frdC 703328..703720 (+) 393 WP_005712722.1 fumarate reductase subunit FrdC -
  WAE38_RS03825 (WAE38_03825) frdD 703734..704078 (+) 345 WP_035522008.1 fumarate reductase subunit FrdD -
  WAE38_RS03835 (WAE38_03835) cysZ 704397..705152 (-) 756 WP_078208285.1 sulfate transporter CysZ -
  WAE38_RS03840 (WAE38_03840) zipA 705262..706080 (+) 819 WP_261468782.1 cell division protein ZipA -
  WAE38_RS03845 (WAE38_03845) ligA 706144..708171 (+) 2028 WP_160404627.1 NAD-dependent DNA ligase LigA -
  WAE38_RS03850 (WAE38_03850) recQ 708229..710058 (-) 1830 WP_035495798.1 ATP-dependent DNA helicase RecQ Machinery gene
  WAE38_RS03855 (WAE38_03855) cyaY 710058..710366 (-) 309 WP_010785933.1 iron donor protein CyaY -
  WAE38_RS03860 (WAE38_03860) dinR/lexA 710449..711078 (-) 630 WP_005712712.1 transcriptional repressor LexA Regulator
  WAE38_RS03865 (WAE38_03865) - 711319..711765 (+) 447 WP_010785932.1 DoxX family protein -
  WAE38_RS03870 (WAE38_03870) - 711786..712088 (+) 303 WP_010785931.1 hypothetical protein -
  WAE38_RS03875 (WAE38_03875) - 712157..713053 (+) 897 WP_202113814.1 DUF692 family protein -
  WAE38_RS03880 (WAE38_03880) - 713062..713796 (+) 735 WP_078208283.1 putative DNA-binding domain-containing protein -
  WAE38_RS03885 (WAE38_03885) - 713800..714375 (+) 576 WP_338824731.1 sigma-70 family RNA polymerase sigma factor -
  WAE38_RS03890 (WAE38_03890) - 714377..714592 (+) 216 WP_005712699.1 hypothetical protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 69091.36 Da        Isoelectric Point: 7.6645

>NTDB_id=863449 WAE38_RS03850 WP_035495798.1 708229..710058(-) (recQ) [Glaesserella parasuis strain H16SD2BY4]
MSVIPLAKAETVLHNVFGYQSFRQGQSEVIEAILSGKDCLVIMTTGGGKSLCYQVPALCFEGITLVISPLISLMKDQVDQ
LLTNGVEAGYINSTQTIEEQQAVEQKAISGQLKLLYLSPEKVMTSNFFQFISLCKISLIAVDEAHCVSQWGHDFRPEYTL
LGGLRKTFPNIPLVALTATADPTTRFDIIHHLKLEDPHTYLGSFDRPNIRYTVQEKFKPVDQLIKFISSQQGKSGIVYCN
SRKKVEELTEKLSSRRFSVMGYHAGMTMQQRETVQNAFQRDNIQIVVATVAFGMGINKSNVRFVVHFDLPRSIEAYYQEI
GRAGRDDLPAEAVLFYDPADYGWLHKVLLEKPESEQRQIEQHKLQAIGAFAESQTCRRLVLLNYFGETRQVACQNCDICL
DPPKKYDGLVDAQKVMSVIYRTGQRFGLHHIIAVLRGLNQQKIREYQHDTLSVYGIGKDKSQEYWISVTRQLIHLGFIRQ
NIVNHSALQLTEQARPILRGETALALASPRLSFSATTYVQKQQASKRYDKDLFARLRFLRKQIADKENIPPYVVFNDATL
QEMAEFMPTTADEMLSINGVGERKLERFGEAFLGLIREHLYHIESIACD

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=863449 WAE38_RS03850 WP_035495798.1 708229..710058(-) (recQ) [Glaesserella parasuis strain H16SD2BY4]
ATGTCAGTTATACCGCTTGCCAAAGCTGAAACGGTTTTACATAACGTTTTCGGCTACCAATCTTTCCGACAAGGTCAATC
AGAAGTGATTGAAGCGATCTTGTCGGGCAAAGATTGCTTGGTGATTATGACGACAGGGGGCGGAAAATCCCTTTGTTATC
AAGTGCCAGCCCTCTGTTTTGAAGGCATAACTCTCGTGATCTCACCTTTAATTTCGCTAATGAAGGATCAGGTAGATCAA
CTGCTCACCAATGGTGTTGAAGCAGGCTATATCAATTCCACCCAAACGATTGAAGAACAGCAAGCGGTTGAACAAAAAGC
GATTTCGGGACAACTCAAGCTACTTTACCTTTCACCCGAAAAGGTAATGACATCAAATTTTTTTCAATTTATCTCATTGT
GCAAAATTAGCCTGATTGCAGTCGATGAAGCACATTGCGTATCTCAATGGGGACACGATTTTCGCCCTGAATACACCTTG
TTAGGCGGTTTGCGAAAAACTTTCCCAAACATACCGCTTGTTGCACTGACTGCAACTGCCGATCCGACAACCCGTTTTGA
TATTATTCATCATCTTAAGTTAGAAGATCCCCATACTTATTTAGGAAGTTTTGATCGTCCTAACATTCGCTATACGGTGC
AAGAAAAATTTAAACCTGTGGATCAACTGATCAAATTTATCAGCAGTCAGCAAGGGAAAAGTGGGATTGTTTATTGTAAT
AGCCGTAAAAAAGTTGAAGAACTCACGGAAAAACTTTCTTCTCGCCGTTTTTCTGTAATGGGCTATCACGCAGGAATGAC
GATGCAACAACGGGAAACCGTTCAAAATGCGTTTCAACGAGATAATATTCAAATTGTCGTTGCTACTGTTGCCTTTGGAA
TGGGGATCAACAAATCCAATGTGCGTTTTGTTGTGCATTTTGATCTGCCAAGAAGCATTGAAGCCTATTATCAAGAAATA
GGACGAGCAGGGAGAGATGATCTTCCTGCGGAAGCGGTGTTATTTTACGATCCTGCGGATTATGGTTGGCTACACAAGGT
ATTACTAGAAAAACCAGAAAGTGAACAACGTCAAATTGAGCAACATAAATTGCAAGCCATTGGGGCTTTTGCCGAATCAC
AAACTTGCCGTCGCCTTGTGTTACTCAACTATTTTGGTGAAACACGCCAAGTTGCTTGTCAAAATTGTGACATTTGCCTT
GATCCACCGAAAAAGTATGATGGCTTAGTTGATGCCCAAAAAGTGATGTCCGTTATTTACCGCACAGGACAACGCTTCGG
CTTACATCATATTATTGCAGTTCTTCGGGGCTTAAATCAGCAAAAAATCCGTGAATATCAACACGACACTCTATCTGTCT
ATGGGATTGGCAAGGATAAATCGCAAGAATATTGGATTAGCGTAACTCGCCAGCTCATTCATCTTGGCTTTATTCGCCAA
AACATTGTTAATCATTCTGCCCTACAACTCACAGAACAAGCTCGCCCCATTTTACGCGGTGAAACAGCCTTGGCACTGGC
TTCCCCACGTTTAAGTTTTTCGGCGACAACTTATGTGCAGAAACAGCAAGCTAGCAAGCGGTATGATAAAGATCTTTTTG
CCCGTTTACGCTTTTTACGCAAACAGATTGCCGATAAGGAAAATATCCCTCCTTATGTGGTTTTCAATGACGCTACCCTA
CAAGAAATGGCAGAATTTATGCCAACGACGGCAGATGAAATGCTTTCCATTAATGGGGTAGGTGAGAGAAAACTGGAGAG
GTTTGGAGAGGCGTTTTTAGGGCTTATTAGAGAGCATTTATATCATATAGAAAGTATTGCTTGTGATTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(221-325)

RecQ zinc-binding (RecQ_Zn_bind)

(349-400)

DEAD/DEAH box helicase (DEAD)

(25-181)

RQC domain (RQC)

(402-509)

HRDC domain (HRDC)

(530-596)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.696

97.209

0.386