Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   WAB15_RS30140 Genome accession   NZ_CP147982
Coordinates   6687820..6688494 (+) Length   224 a.a.
NCBI ID   WP_407288135.1    Uniprot ID   A0ABZ2QXD3
Organism   Streptomyces sp. BP-8     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6682820..6693494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAB15_RS30120 (WAB15_30100) - 6683134..6683364 (-) 231 WP_033267354.1 hypothetical protein -
  WAB15_RS30125 (WAB15_30105) - 6683809..6685929 (+) 2121 WP_407288132.1 type IIA DNA topoisomerase subunit B -
  WAB15_RS30130 (WAB15_30110) - 6686087..6686575 (+) 489 WP_407288133.1 DUF1453 domain-containing protein -
  WAB15_RS30135 (WAB15_30115) - 6686657..6687823 (+) 1167 WP_407288134.1 sensor histidine kinase -
  WAB15_RS30140 (WAB15_30120) vraR 6687820..6688494 (+) 675 WP_407288135.1 response regulator Regulator
  WAB15_RS30145 (WAB15_30125) - 6688652..6689326 (-) 675 WP_407288136.1 response regulator -
  WAB15_RS30150 (WAB15_30130) - 6689323..6690984 (-) 1662 WP_407288137.1 ATP-binding protein -
  WAB15_RS30155 (WAB15_30135) - 6691645..6692643 (-) 999 WP_407288138.1 sucrase ferredoxin -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24208.57 Da        Isoelectric Point: 5.1434

>NTDB_id=863430 WAB15_RS30140 WP_407288135.1 6687820..6688494(+) (vraR) [Streptomyces sp. BP-8]
MTARKVARVVVADDQTVVREGIVMLLGLLPGIEVVGSAADGEEAVRMVAELAPDVVLMDLRMPRCDGVEATRRIRADHPG
TQVVVLTTYADDDSLFPALQAGARGYLTKDADGDEIVRAIDDVLSGEAGLSPRIQRRLLERVTEPVRTLSQPPDEPPDGL
TAREVEVLRLVADGQSNPEIARTLHVSTATVKTHINNLFAKAGLRDRTQAVHYAYRHGLAQPPG

Nucleotide


Download         Length: 675 bp        

>NTDB_id=863430 WAB15_RS30140 WP_407288135.1 6687820..6688494(+) (vraR) [Streptomyces sp. BP-8]
ATGACGGCGCGCAAGGTGGCACGGGTCGTGGTCGCCGATGATCAGACCGTGGTGCGTGAGGGCATCGTGATGCTCCTGGG
GCTGCTGCCGGGCATCGAGGTCGTCGGATCGGCCGCAGACGGCGAGGAAGCCGTCCGTATGGTCGCCGAACTAGCCCCCG
ACGTCGTCCTGATGGACCTGCGCATGCCACGCTGCGACGGGGTCGAGGCCACTCGCCGCATCCGCGCGGACCACCCCGGA
ACCCAGGTCGTGGTGCTCACCACCTACGCCGACGACGACTCGCTCTTCCCTGCCTTGCAGGCCGGCGCCCGCGGCTACCT
GACCAAGGACGCGGACGGCGATGAGATCGTCCGTGCCATCGACGACGTGCTCTCGGGTGAGGCCGGGCTGTCACCGAGGA
TCCAGCGCAGGCTCCTGGAACGCGTCACGGAGCCCGTACGGACCCTGTCGCAACCGCCCGACGAGCCACCGGACGGGCTC
ACCGCGCGCGAGGTGGAGGTGCTGCGGCTGGTCGCCGACGGCCAGTCCAATCCGGAGATCGCGCGCACGCTGCATGTCTC
CACTGCGACCGTGAAGACCCACATCAACAACCTCTTCGCCAAAGCGGGACTGCGCGACCGGACTCAAGCCGTCCACTACG
CCTACCGCCACGGTCTCGCGCAGCCGCCCGGATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(159-214)

Response regulator receiver domain (Response_reg)

(9-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.72

95.536

0.379
  degU Bacillus subtilis subsp. subtilis str. 168

36.771

99.554

0.366